KseniaMIPT / tcrgrapherLinks
☆10Updated last month
Alternatives and similar repositories for tcrgrapher
Users that are interested in tcrgrapher are comparing it to the libraries listed below
Sorting:
- Integrative analysis for scTCR- and scRNA-seq data☆20Updated 3 months ago
- ☆29Updated 2 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Using TCR and expression for sequence embedding☆56Updated 4 months ago
- ☆23Updated last month
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated last month
- ☆12Updated 11 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆28Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- RNA velocity validation☆22Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 8 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Inference of TCR motifs☆32Updated last week
- A post-clustering differential expression (DE) method robust to false-positive inflation caused by double dipping☆28Updated 3 months ago
- ☆32Updated 5 months ago
- Cell type pipes for R☆51Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆52Updated 3 weeks ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- ☆21Updated 3 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆28Updated 3 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆39Updated 8 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Single-cell Mutual Information-based Network Engineering Ranger☆17Updated 3 weeks ago
- .h5mu files interface for Seurat☆32Updated last year
- ☆35Updated 3 months ago