KseniaMIPT / tcrgrapherLinks
☆10Updated 3 weeks ago
Alternatives and similar repositories for tcrgrapher
Users that are interested in tcrgrapher are comparing it to the libraries listed below
Sorting:
- Integrative analysis for scTCR- and scRNA-seq data☆20Updated 2 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- ☆13Updated 10 months ago
- ConsensusTME Gene Sets and R Script☆39Updated 11 months ago
- ☆41Updated 4 years ago
- ☆29Updated 2 years ago
- Using TCR and expression for sequence embedding☆54Updated 4 months ago
- Single-cell Mutual Information-based Network Engineering Ranger☆17Updated last week
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 4 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- ☆12Updated 2 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- Inference of TCR motifs☆30Updated last month
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- ☆35Updated 3 months ago
- .h5mu files interface for Seurat☆30Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- ☆41Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- ☆23Updated 2 weeks ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆27Updated 5 years ago
- To reveal the cellular heterogeneity within flow cytometry data, clustering and pseudotime analysis can be performed. Here, we demonstrat…☆12Updated 2 years ago
- Using BCR and expression for sequence embedding☆22Updated last week
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆51Updated this week
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- RNA velocity validation☆22Updated 3 years ago