Alternatives and similar repositories for tcrgrapher

Users that are interested in tcrgrapher are comparing it to the libraries listed below

• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆60Updated 3 months ago
• antigenomics / tcr-annotation-methodology
  📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery
  ☆14Updated 2 months ago
• sankaranlab / SCAVENGE
  SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.
  ☆91Updated 2 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆90Updated 5 months ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆39Updated 7 years ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆91Updated 6 months ago
• s175573 / GIANA
  Ultrafast TCR clustering algorithm based on geometric isometry
  ☆69Updated last year
• SchubertLab / mvTCR
  ☆56Updated last year
• pwwang / immunopipe
  Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data
  ☆20Updated this week
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated 2 years ago
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆69Updated 3 weeks ago
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated 3 weeks ago
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆88Updated last month
• ajaynadig / TRADEtools
  ☆33Updated 8 months ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• theislab / destiny
  R package for single cell and other data analysis using diffusion maps
  ☆91Updated 3 weeks ago
• HetzDra / turboGliph
  R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…
  ☆25Updated 3 years ago
• HelenaLC / muscat-comparison
  ☆12Updated last year
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆42Updated 3 months ago
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆43Updated 9 months ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆64Updated 3 years ago
• UCSF-DSCOLAB / pan_cancer_immune_archetypes
  ☆12Updated 4 months ago
• vibscc / DALI
  R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem
  ☆20Updated 7 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated 3 months ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆27Updated 3 years ago
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆36Updated 2 years ago
• shanzha9 / siAgeModel
  ☆13Updated last year
• mathewchamberlain / SignacX
  Signac
  ☆25Updated 2 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆97Updated 11 months ago