Qile0317 / APackOfTheClones
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
☆15Updated 4 months ago
Alternatives and similar repositories for APackOfTheClones:
Users that are interested in APackOfTheClones are comparing it to the libraries listed below
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆33Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 2 weeks ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆62Updated 5 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆25Updated this week
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆55Updated 4 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 11 months ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆12Updated 2 months ago
- An r package that works as a wrapper to homologene☆43Updated last year
- ☆53Updated 4 years ago
- A database of useful gene signatures for single-cell analysis☆20Updated 11 months ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Various utility functions for Seurat single-cell analysis☆46Updated 3 months ago
- Cell type pipes for R☆51Updated last year
- ☆30Updated 2 months ago
- ☆40Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- scWGCNA☆58Updated 2 years ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆14Updated last year
- Single-cell analysis with non-negative matrix factorization☆44Updated 5 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆43Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated 9 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆75Updated 6 months ago