Qile0317 / APackOfTheClonesLinks
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
☆20Updated 3 months ago
Alternatives and similar repositories for APackOfTheClones
Users that are interested in APackOfTheClones are comparing it to the libraries listed below
Sorting:
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 5 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆44Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆38Updated last week
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Cell type pipes for R☆52Updated last year
- Normalize CITEseq Data☆66Updated 3 weeks ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Updated 4 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- R package for semi-supervised single-cell data integration☆90Updated 3 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆131Updated 4 months ago
- Enrichment Networks for Pathway Enrichment Analysis☆62Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆77Updated 3 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 7 months ago
- ☆50Updated 5 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- ☆74Updated 2 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- ☆41Updated 4 years ago
- scWGCNA☆61Updated 3 years ago
- A database of useful gene signatures for single-cell analysis☆27Updated 6 months ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆34Updated 3 weeks ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 11 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆67Updated last year
- A R package for advanced single cell data viz☆68Updated 3 months ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆14Updated 10 months ago
- ☆63Updated 6 years ago