Qile0317 / APackOfTheClonesLinks
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
☆19Updated last month
Alternatives and similar repositories for APackOfTheClones
Users that are interested in APackOfTheClones are comparing it to the libraries listed below
Sorting:
- Coarse-graining of large single-cell RNA-seq data into metacells☆89Updated 3 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆43Updated last year
- R Package for Single-Cell Dataset Processing and Visualization☆64Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆65Updated 10 months ago
- R package for semi-supervised single-cell data integration☆90Updated last month
- ☆41Updated 4 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆31Updated 5 months ago
- Various utility functions for Seurat single-cell analysis☆53Updated 2 weeks ago
- Cell type pipes for R☆52Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆124Updated 2 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 9 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated 2 weeks ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 2 years ago
- ☆73Updated 2 years ago
- ☆50Updated 5 years ago
- Single cell RNA-seq analysis bundle☆36Updated 6 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆57Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 5 months ago
- Normalize CITEseq Data☆66Updated 5 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆35Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- scWGCNA☆61Updated 2 years ago
- Methods for decontamination of single cell data☆47Updated 7 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- A R package for advanced single cell data viz☆68Updated last month
- ☆62Updated 6 years ago