Qile0317 / APackOfTheClonesLinks
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
☆17Updated last month
Alternatives and similar repositories for APackOfTheClones
Users that are interested in APackOfTheClones are comparing it to the libraries listed below
Sorting:
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆38Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆66Updated 8 months ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆27Updated last month
- A database of useful gene signatures for single-cell analysis☆25Updated last month
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 7 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆81Updated 9 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- Various utility functions for Seurat single-cell analysis☆49Updated 6 months ago
- Cell type pipes for R☆51Updated last year
- A pipeline for scRNA-seq data analysis☆14Updated 2 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated 11 months ago
- ☆32Updated 5 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆63Updated 3 years ago
- ☆41Updated 4 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆82Updated 3 weeks ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- scWGCNA☆61Updated 2 years ago
- A R package for advanced single cell data viz☆67Updated last year
- ☆41Updated last week
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆29Updated 2 years ago