aapupu / MISTView external linksLinks
An interpretable and flexible deep learning framework for single-T cell transcriptome and receptor analysis
☆14Apr 5, 2025Updated 10 months ago
Alternatives and similar repositories for MIST
Users that are interested in MIST are comparing it to the libraries listed below
Sorting:
- Single-cell immune repertoire trajectory analysis in R☆11Aug 8, 2025Updated 6 months ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 5 months ago
- Single-cell Mutual Information-based Network Engineering Ranger☆22Aug 28, 2025Updated 5 months ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆21Apr 14, 2025Updated 9 months ago
- Using BCR and expression for sequence embedding☆25Dec 10, 2025Updated 2 months ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆27Oct 1, 2022Updated 3 years ago
- Inference of TCR motifs☆32Jun 17, 2025Updated 7 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆40Nov 18, 2025Updated 2 months ago
- ☆11Mar 23, 2024Updated last year
- This project attempts to model and acquire data from SF OpenData - and other sources - to predict the relative risk of fire in San Franci…☆10Jun 21, 2018Updated 7 years ago
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago
- ☆11May 11, 2024Updated last year
- ☆21Sep 4, 2025Updated 5 months ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- Survival Analysis for Protein-Level TCGA Analysis☆11Nov 30, 2018Updated 7 years ago
- 绯浅yousa_blog_backup☆12Nov 21, 2019Updated 6 years ago
- ☆10Nov 29, 2022Updated 3 years ago
- Visualization of nucleotide alignment algorithms 🧬 DNA sequence as input, best aligning match as output.☆13Aug 11, 2020Updated 5 years ago
- GitKraken lesson (forked from HBS-RCS)☆10Jul 15, 2021Updated 4 years ago
- ☆14Oct 16, 2025Updated 3 months ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆49Jun 4, 2025Updated 8 months ago
- code for statistical learning☆14Aug 29, 2020Updated 5 years ago
- Identifying cell subpopulational differences among single-cell biospecimens☆14Sep 27, 2024Updated last year
- PhosR is a package for the comprehensive analysis of phosphoproteomic data.☆17Sep 4, 2025Updated 5 months ago
- Functional code templates for the Star Protocols paper describing consolidated WES variant calling with 3 callers☆10Oct 18, 2024Updated last year
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆19Updated this week
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆10Jul 21, 2025Updated 6 months ago
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆57Sep 17, 2024Updated last year
- Package to preprocess ontologies and train OntoVAE models.☆12Jan 7, 2025Updated last year
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 4 months ago
- ☆16Apr 18, 2025Updated 9 months ago
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆20Updated this week
- STREAM2: Fast, scalable, and interactive trajectory analysis of single-cell omics data☆13Apr 1, 2024Updated last year
- Publically accessible code for DIISCO method☆12Oct 15, 2025Updated 3 months ago
- This repository implements the winning solution for the single cell perturbation problems☆15Dec 22, 2023Updated 2 years ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- Querying cellular states and programs by learning representations of gene sets☆15Nov 2, 2025Updated 3 months ago
- Complex Heatmaps Using Base Graphics☆14Apr 24, 2023Updated 2 years ago