BorchLab / immApexLinks
Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning
☆12Updated 3 weeks ago
Alternatives and similar repositories for immApex
Users that are interested in immApex are comparing it to the libraries listed below
Sorting:
- interactive plots for differential expression analysis☆34Updated 5 months ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆28Updated 2 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Docker container for genomics analyses in R.☆26Updated last year
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆17Updated last month
- A single cell sequencing read simulator.☆33Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆50Updated last month
- Merge fastq files split over lanes☆20Updated 7 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- ☆31Updated last year
- ☆20Updated 2 years ago
- Identification of viral RdRPs in single-cell RNA sequencing data☆12Updated 4 months ago
- 🧬 Gene analysis toolkit based on R☆59Updated 10 months ago
- Explore the cancer relevance of your gene list☆52Updated 2 months ago
- Inference of TCR motifs☆32Updated 5 months ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated last year
- ☆29Updated last year
- Scripts to install as a Bioconda package for making workflows☆17Updated last year
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Updated 5 months ago
- ☆15Updated 3 years ago
- A rust framework to make using alevin-fry even simpler☆60Updated 6 months ago
- Motif manipulation functions for R.☆30Updated last month
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆40Updated 3 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆35Updated last week
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 7 months ago
- SCASA: Single cell transcript quantification tool☆22Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 6 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago