Alternatives and similar repositories for immApex

Users that are interested in immApex are comparing it to the libraries listed below

• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated 2 years ago
• dakwok / SSNIP
  The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…
  ☆20Updated 9 months ago
• jsschrepping / r_docker
  Docker container for genomics analyses in R.
  ☆26Updated last year
• Papatheodorou-Group / CATD_snakemake
  Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…
  ☆15Updated 9 months ago
• JSB-UCLA / scReadSim
  A single cell sequencing read simulator.
  ☆34Updated last year
• bjmt / universalmotif
  Motif manipulation functions for R.
  ☆30Updated 4 months ago
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆22Updated 2 years ago
• ncrna / PathogenTrack
  A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
  ☆28Updated 2 years ago
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated this week
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated 2 years ago
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆35Updated 2 months ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated last week
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆52Updated last month
• Xinglab / rMATS-long
  ☆34Updated 2 months ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 7 months ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆19Updated 5 months ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆61Updated last year
• Nusob888 / fasterqParseR
  Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data
  ☆18Updated last year
• jokergoo / KeywordsEnrichment
  ☆32Updated 2 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• ebi-gene-expression-group / r-seurat-scripts
  Scripts to install as a Bioconda package for making workflows
  ☆18Updated last year
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆25Updated last month
• julienroyulaval / DESeq2-MultiBatch
  Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2
  ☆17Updated 3 weeks ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆41Updated 3 years ago
• songlab-cal / scquint
  ☆18Updated last year
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆26Updated last year
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆17Updated 3 years ago
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆28Updated 3 years ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆32Updated 7 months ago