BorchLab / immApexLinks
Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning
☆11Updated this week
Alternatives and similar repositories for immApex
Users that are interested in immApex are comparing it to the libraries listed below
Sorting:
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆19Updated last month
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆17Updated last year
- An R package to analyze single-cell V(D)J data☆28Updated last year
- Integrative analysis for scTCR- and scRNA-seq data☆20Updated 2 months ago
- interactive plots for differential expression analysis☆32Updated 2 months ago
- Using BCR and expression for sequence embedding☆22Updated last week
- Time-Course Multi-Omics data integration☆25Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- ☆22Updated 11 months ago
- ☆29Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated 2 weeks ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated last week
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 8 months ago
- ☆20Updated last year
- An R/Bioconductor package to identify higher-order molecular phenotypes☆16Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated last month
- Create QC and summary reports for Alevin output☆32Updated last month
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆35Updated 2 weeks ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆19Updated 2 years ago
- simplified cellranger for long-read data☆19Updated last month
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated 11 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago