Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning
☆14May 7, 2026Updated last month
Alternatives and similar repositories for immApex
Users that are interested in immApex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated 10 months ago
- A computational framework for bulk RNA-seq deconvolution☆11Dec 3, 2024Updated last year
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆21Apr 14, 2025Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆18Jan 10, 2024Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆26May 17, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Collection of papers related to BCR repertoire analyses☆20Jan 21, 2022Updated 4 years ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- ☆35Mar 16, 2026Updated 2 months ago
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆16Oct 31, 2024Updated last year
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jul 19, 2023Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆37Jan 13, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12May 11, 2024Updated 2 years ago
- ☆18Jun 11, 2024Updated last year
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆41May 24, 2026Updated 2 weeks ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆17Feb 19, 2026Updated 3 months ago
- Using BCR and expression for sequence embedding☆27Apr 3, 2026Updated 2 months ago
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- ☆11Jul 8, 2024Updated last year
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Simulate pseudo-bulk RNAseq samples from scRNAseq expression data☆19Jun 1, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- To reveal the cellular heterogeneity within flow cytometry data, clustering and pseudotime analysis can be performed. Here, we demonstrat…☆14Jul 5, 2022Updated 3 years ago
- A simple fastp-MultiQC nextflow pipeline☆12Feb 2, 2023Updated 3 years ago
- A simple package to explore MDPI´s articles by journal. A series of functions help to obtain lists of papers, obtain data from them (turn…☆21Mar 19, 2025Updated last year
- POC Nextflow pipeline to run Illumina DRAGEN software☆14Aug 15, 2025Updated 9 months ago
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- ☆17May 19, 2025Updated last year
- List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures☆18Aug 28, 2020Updated 5 years ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 10 months ago
- ☆16Apr 29, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This repo demonstrates the development of Retrieval Augmented Generation (RAG).☆11May 3, 2025Updated last year
- Shiny UI for the NGLVieweR package☆11Nov 19, 2024Updated last year
- Rstudio theme collection☆18Nov 27, 2025Updated 6 months ago
- Open Biodiversity Knowledge Management System☆18Apr 20, 2026Updated last month
- A basic science lab framework aimed at reproducibility and lab management.☆15May 22, 2026Updated 2 weeks ago
- R package for analysing single cell data☆64Dec 8, 2022Updated 3 years ago
- Even better than eda-reversing...I hope☆65Feb 14, 2010Updated 16 years ago