wdingx / pan-genome-visualization
☆14Updated 2 years ago
Alternatives and similar repositories for pan-genome-visualization
Users that are interested in pan-genome-visualization are comparing it to the libraries listed below
Sorting:
- Highly sensitive pathogen detection☆12Updated 4 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆24Updated last year
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 8 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆12Updated 5 months ago
- ☆14Updated last year
- ☆12Updated 2 years ago
- Functions to compare a SV call sets against a truth set.☆29Updated last year
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- An RNA virus strain-level identification tool for short reads.☆21Updated 11 months ago
- ☆13Updated 3 years ago
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 months ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 years ago
- transposable element typing pipeline☆18Updated last year
- convert a blast output to a bed file☆12Updated 9 years ago
- Structural variant (SV) analysis tools☆36Updated 10 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆14Updated 5 months ago
- ☆14Updated last year
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆21Updated last year
- Mutation tracker for microbial genomes☆15Updated 4 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆21Updated 6 months ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 8 months ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Updated 5 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago