Alternatives and similar repositories for pan-genome-visualization

Users that are interested in pan-genome-visualization are comparing it to the libraries listed below

• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated last year
• xia-lab / Seq2Fun
  ☆17Updated 3 months ago
• telatin / learn_bash
  Toy files and training material to introduce Linux to molecular biologists
  ☆22Updated 2 years ago
• bcgsc / SSAKE
  🍶 Genome assembly with short sequence reads
  ☆26Updated last year
• UofABioinformaticsHub / shinyNgsreports
  The shiny app that accompanies the ngsReports R package
  ☆14Updated 4 years ago
• cmdcolin / mafviewer
  A JBrowse plugin to view multiple alignment format (MAF) files
  ☆27Updated last year
• gjun / muCNV
  ☆20Updated last year
• MorrellLAB / sequence_handling
  A series of scripts to automate sequence workflows
  ☆19Updated 4 months ago
• gsneha26 / urWGS
  Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5
  ☆19Updated last year
• NatPRoach / c_elegans_dRNAseq_analysis
  Scripts used in the analysis of C elegans dRNAseq data
  ☆14Updated last year
• deweylab / detonate
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆13Updated 9 years ago
• yuansliu / minirmd
  ☆12Updated 2 years ago
• makovalab-psu / T2T_primate_XY
  ☆12Updated last year
• fritzsedlazeck / SURVIVOR_ant
  A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
  ☆13Updated 7 years ago
• MGI-tech-bioinformatics / SARS-CoV-2_Multi-PCR_v1.0
  SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data
  ☆20Updated 3 years ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 10 months ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆30Updated 4 months ago
• liaoherui / VirStrain
  An RNA virus strain-level identification tool for short reads.
  ☆22Updated last year
• DessimozLab / pyham
  ☆11Updated this week
• marieBvr / TEs_genes_relationship_pipeline
  Distribution of TEs and their relationship to genes in host genome
  ☆23Updated 2 years ago
• ETCHING-team / ETCHING
  Ultra-fast, high-performing structural variation (SV) detector
  ☆23Updated 2 years ago
• photocyte / plot_mitochondrial_genome_with_CIRCOS
  ☆15Updated 7 years ago
• shenwei356 / easy_sbatch
  easy_sbatch - Batch submitting Slurm jobs with script templates
  ☆16Updated 3 years ago
• DaehwanKimLab / seqwho
  SeqWho - A reliable and rapid FASTQ(A) file classifier
  ☆10Updated 3 years ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 4 years ago
• PacificBiosciences / hg002-ccs
  ☆15Updated 4 years ago
• jonassibbesen / vgrna-project-paper
  Bash scripts and data used in pantranscriptomic paper
  ☆24Updated 2 years ago
• hillerlab / CESAR2.0
  ☆28Updated 2 years ago
• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆17Updated 10 months ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago