saezlab / dorothea-pyLinks
Dorothea package in Python
☆11Updated 3 years ago
Alternatives and similar repositories for dorothea-py
Users that are interested in dorothea-py are comparing it to the libraries listed below
Sorting:
- Benchmark of GRNs using the GRETA pipeline☆31Updated last week
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Geometry-preserving random sampling☆96Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆52Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 8 months ago
- pseudobulking on an AnnData object☆34Updated 10 months ago
- ☆62Updated 8 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 3 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆98Updated 8 months ago
- ☆37Updated 3 weeks ago
- Python implementation of Milo for differential abundance testing on KNN graph☆81Updated 11 months ago
- Multi-resolution Variational Inference☆22Updated 3 weeks ago
- PROGENY Python implementation☆12Updated 3 years ago
- A method for analyzing scATAC-seq experiments.☆34Updated 7 months ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- A python package for chromVAR☆33Updated 2 years ago
- ☆48Updated 2 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 7 months ago
- Single cell omics biology annotations☆53Updated 9 months ago
- Non-parametric density inference for single-cell analysis.☆73Updated 8 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆22Updated 4 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆19Updated 5 years ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆112Updated 2 months ago
- data and model repository for single-cell data☆136Updated 2 years ago
- Clonotype Neighbor Graph Analysis☆95Updated 5 months ago
- Mapping the Functional Landscape of TCR Repertoire☆35Updated 4 years ago