Alternatives and similar repositories for dorothea-py:

Users that are interested in dorothea-py are comparing it to the libraries listed below

• saezlab / progeny-py
  PROGENY Python implementation
  ☆12Updated 2 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆47Updated 2 weeks ago
• lcmmichielsen / scHPL
  ☆34Updated 9 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆24Updated last month
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated last year
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆52Updated 6 months ago
• PoolLab / generecovery
  ☆29Updated last year
• vibscc / DALI
  R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem
  ☆19Updated last year
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆78Updated 3 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆49Updated 3 weeks ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆22Updated this week
• pachterlab / BHGP_2022
  ☆21Updated 2 years ago
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆28Updated last year
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆62Updated this week
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆26Updated 4 months ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 2 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆39Updated 11 months ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• Teichlab / sctk
  ☆34Updated 4 months ago
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆28Updated last year
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 3 years ago
• lhe17 / nebula
  ☆35Updated 11 months ago
• lilab-bcb / harmony-pytorch
  ☆51Updated last year
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆31Updated 3 weeks ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆70Updated 9 months ago
• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 3 years ago
• KlugerLab / DAseq
  ☆39Updated 3 years ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆23Updated 2 years ago
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 3 years ago