pwwang / immunopipeLinks
Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data
☆20Updated last week
Alternatives and similar repositories for immunopipe
Users that are interested in immunopipe are comparing it to the libraries listed below
Sorting:
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 4 years ago
- ☆43Updated 4 years ago
- ☆51Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- ☆47Updated 5 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- ☆12Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated 7 months ago
- Scripts to install as a Bioconda package for making workflows☆17Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- ☆55Updated 4 years ago
- ☆24Updated last month
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- ☆39Updated 4 years ago
- binned motif enrichment analysis and visualisation☆43Updated 3 weeks ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Network construction Algorithm☆22Updated last year
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated last year