pwwang / immunopipeLinks
Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data
☆20Updated this week
Alternatives and similar repositories for immunopipe
Users that are interested in immunopipe are comparing it to the libraries listed below
Sorting:
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Updated 3 years ago
- Single-cell immune repertoire trajectory analysis in R☆11Updated 5 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated this week
- R package for analysing single cell data☆59Updated 3 years ago
- ☆29Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 3 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆25Updated 2 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- binned motif enrichment analysis and visualisation☆43Updated 2 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 9 months ago
- Network construction Algorithm☆22Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 4 months ago
- A single cell sequencing read simulator.☆33Updated last year
- Scripts to install as a Bioconda package for making workflows☆18Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆44Updated 3 years ago
- An R package designed to demultiplex cell hashing data☆31Updated last month
- Human brain, >200,000 nuclei☆23Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 3 years ago
- ☆39Updated 4 years ago
- Single-cell Case Control Analysis☆52Updated 3 weeks ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆37Updated 7 months ago
- Peak caller for CUT&TAG data☆30Updated 3 years ago