pwwang / immunopipe
Integrative analysis for scTCR- and scRNA-seq data
☆15Updated this week
Alternatives and similar repositories for immunopipe:
Users that are interested in immunopipe are comparing it to the libraries listed below
- An R package to analyze single-cell V(D)J data☆24Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆12Updated 10 months ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆16Updated 2 weeks ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 6 months ago
- ☆29Updated last year
- Inference of TCR motifs☆29Updated last week
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 9 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 3 years ago
- GLASS consortium☆13Updated 2 years ago
- ☆20Updated last year
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆35Updated 3 weeks ago
- Single-cell RNA Processing Software☆11Updated 5 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- ☆12Updated 5 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- ☆45Updated 7 months ago
- SCASA: Single cell transcript quantification tool☆20Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆21Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- scover☆23Updated last year