pwwang / immunopipeLinks
Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data
☆20Updated last week
Alternatives and similar repositories for immunopipe
Users that are interested in immunopipe are comparing it to the libraries listed below
Sorting:
- An R package to analyze single-cell V(D)J data☆28Updated last year
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Inference of TCR motifs☆32Updated 2 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Normalize CITEseq Data☆66Updated 4 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- ☆51Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Single-cell immune repertoire trajectory analysis in R☆11Updated 3 weeks ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 4 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 2 weeks ago
- ☆47Updated 5 years ago
- binned motif enrichment analysis and visualisation☆41Updated last month
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- GLASS consortium☆14Updated 3 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- ☆39Updated 4 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 11 months ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- ☆42Updated 4 years ago
- Bayesian network plot for the enrichment analysis results☆65Updated 11 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 3 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆11Updated last month