saeyslab / brainimmuneatlasLinks
Overview of the scripts used to analyse the brainimmuneatlas data
☆19Updated 4 years ago
Alternatives and similar repositories for brainimmuneatlas
Users that are interested in brainimmuneatlas are comparing it to the libraries listed below
Sorting:
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 5 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆34Updated last year
- CellRank's reproducibility repository.☆15Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated 2 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last week
- Ordering gene-expression and functional events in single-cell experiments☆23Updated last year
- R package for specialised analysis of single cell data☆39Updated 2 years ago
- R package for Bioconductor submission☆37Updated 2 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆24Updated 2 years ago
- ☆42Updated 4 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Landscape Single Cell Entropy☆20Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆42Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- single nuclei RNA-seq analysis toolbox☆10Updated 8 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆58Updated last year
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- A record of the analysis pipelines used to create the HTAPP data☆33Updated 5 months ago
- ☆29Updated 2 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago