saeyslab / brainimmuneatlas
Overview of the scripts used to analyse the brainimmuneatlas data
☆19Updated 3 years ago
Related projects: ⓘ
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆22Updated 4 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆29Updated 6 months ago
- Single-cell Orientation Tracing☆21Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆32Updated last year
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Cluster Identity Predictor (R package implementation)☆18Updated 2 years ago
- Build predicted cell-cell interaction networks from single-cell data.☆9Updated last year
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 3 years ago
- Ordering gene-expression and functional events in single-cell experiments☆16Updated 6 months ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 5 years ago
- CellRank's reproducibility repository.☆14Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆22Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆14Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆19Updated 5 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆16Updated last year
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 2 months ago
- single nuclei RNA-seq analysis toolbox☆10Updated 7 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 4 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆18Updated last year
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆19Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆25Updated 2 months ago
- ☆25Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆31Updated 2 years ago
- ☆32Updated 8 months ago
- ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineageCode and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆9Updated 4 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 4 years ago
- ☆26Updated this week
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆15Updated 2 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆17Updated 4 years ago
- R package for specialised analysis of single cell data☆35Updated last year