saeyslab / brainimmuneatlas
Overview of the scripts used to analyse the brainimmuneatlas data
☆19Updated 4 years ago
Alternatives and similar repositories for brainimmuneatlas:
Users that are interested in brainimmuneatlas are comparing it to the libraries listed below
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 4 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 4 months ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆23Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆16Updated 2 months ago
- Ordering gene-expression and functional events in single-cell experiments☆21Updated last year
- ☆13Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 3 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆19Updated 2 years ago
- An r package that works as a wrapper to homologene☆43Updated last year
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- Build predicted cell-cell interaction networks from single-cell data.☆9Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆39Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- ☆28Updated 2 years ago