Pipeline for generating RNAseq-based cancer patient reports
☆12May 20, 2026Updated this week
Alternatives and similar repositories for RNAsum
Users that are interested in RNAsum are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆17Dec 28, 2022Updated 3 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆14May 16, 2026Updated last week
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Targeted and non-targeted anticancer drugs and drug regimens☆31Mar 23, 2026Updated 2 months ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Intersect multiple VCF files with haplotype awareness☆26Mar 14, 2021Updated 5 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 11 months ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆26Jan 28, 2026Updated 3 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Jun 13, 2022Updated 3 years ago
- A Carpentries-style lesson on RNA-Sequencing☆21May 1, 2023Updated 3 years ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- sort genomic data☆36Nov 7, 2025Updated 6 months ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆18Jun 28, 2024Updated last year
- Issue tracker for the Open Targets Platform☆13Jul 8, 2025Updated 10 months ago
- Filter and prioritize fusion calls☆20Updated this week
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆26May 16, 2026Updated last week
- A library and tool for accessing remote BLOW5 files.☆24Feb 5, 2026Updated 3 months ago
- Simple tool to verticalize text delimited files.☆37May 6, 2024Updated 2 years ago
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago
- R package for generating beautiful and customizable plots for the exons and introns of any gene☆12Jul 26, 2021Updated 4 years ago
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Jul 26, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- RNA-seq analysis scripts☆17Jan 8, 2026Updated 4 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- ☆15Aug 11, 2025Updated 9 months ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 6 years ago
- Tutorial on survival modeling with omics data☆11May 6, 2026Updated 2 weeks ago
- v2.x of the microassembly based somatic variant caller☆28May 6, 2026Updated 2 weeks ago