mlinderm / npsvLinks
Non-parametric structural variant genotyper
☆15Updated 3 years ago
Alternatives and similar repositories for npsv
Users that are interested in npsv are comparing it to the libraries listed below
Sorting:
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- Detects human contamination in bam files☆16Updated 5 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Benchmark structural variant calls against a reference set☆17Updated 11 months ago
- ☆16Updated 3 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 4 years ago
- ☆20Updated last year
- Benchmarking variant calling in polyploids☆15Updated 3 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Updated 5 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 3 weeks ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 5 months ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 6 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆11Updated 3 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10Updated 4 years ago
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- ☆14Updated 2 years ago
- ☆14Updated 2 years ago
- ☆13Updated 3 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 10 months ago
- DNN-based small variant caller☆12Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- GBWT-based handle graph☆31Updated last week
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago