dnanexus / IndexTools
IndexTools is a toolkit for extremely fast NGS analysis based on index files.
☆17Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for IndexTools
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Updated 3 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆13Updated last year
- Index and query k-mer matrices in BGZF☆13Updated 6 years ago
- v2.x of the microassembly based somatic variant caller☆14Updated 2 months ago
- Integrated Variant Caller☆17Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Updated last month
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- Hemang Parikh☆11Updated 8 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- Unfazed by genomic variant phasing☆26Updated 5 months ago
- ☆12Updated 3 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Structural variant pipeline☆17Updated 4 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Pan gGnome Viewer☆10Updated 9 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 7 months ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆20Updated 5 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 3 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- ☆9Updated 2 years ago
- The python binding for D4 format☆16Updated 3 years ago
- ☆22Updated 2 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago