umccr / umccriseLinks
DRAGEN Tumor/Normal workflow post-processing
☆22Updated last year
Alternatives and similar repositories for umccrise
Users that are interested in umccrise are comparing it to the libraries listed below
Sorting:
- DriverPower☆26Updated 7 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- Filter and prioritize fusion calls☆20Updated 11 months ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated 4 months ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated 3 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- ☆17Updated last year
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Utility functions for FACETS☆39Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Model-based tumour subclonal deconvolution using population genetics☆33Updated 2 weeks ago
- ☆33Updated 3 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆27Updated 11 months ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆39Updated 4 years ago
- An R package for predicting HR deficiency from mutation contexts☆29Updated 7 months ago