umccr / umccriseLinks
DRAGEN Tumor/Normal workflow post-processing
☆23Updated 2 years ago
Alternatives and similar repositories for umccrise
Users that are interested in umccrise are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 8 months ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- DriverPower☆26Updated 10 months ago
- Filter and prioritize fusion calls☆20Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆40Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated last month
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- ☆33Updated 3 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- A small R package to make sequencing read coverage plots in R.☆39Updated last week
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 4 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- ☆18Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- R package for DNA methylation analysis☆19Updated last year
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated last month
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago