umccr / umccriseLinks
DRAGEN Tumor/Normal workflow post-processing
☆25Updated 2 years ago
Alternatives and similar repositories for umccrise
Users that are interested in umccrise are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Filter and prioritize fusion calls☆20Updated last year
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- ☆33Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- DriverPower☆26Updated 11 months ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated 3 months ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 9 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 6 months ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 10 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 9 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- a set of NGS pipelines☆24Updated last month
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated 2 years ago
- Utility functions for FACETS☆39Updated 2 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆35Updated last month
- ☆17Updated last year