ETCHING-team / ETCHINGLinks
Ultra-fast, high-performing structural variation (SV) detector
☆23Updated 2 years ago
Alternatives and similar repositories for ETCHING
Users that are interested in ETCHING are comparing it to the libraries listed below
Sorting:
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated 2 months ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 4 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 6 months ago
- ☆20Updated 2 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 2 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated 2 weeks ago
- Enabling differential allele-specific analysis☆11Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 3 months ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- ☆16Updated last year
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 3 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Toolkit for calling and analyzing de novo STR mutations☆17Updated 2 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- ☆23Updated last week
- Gene copy number prediction from k-mer frequencies☆14Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 3 years ago
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Updated 4 years ago