ETCHING-team / ETCHINGLinks
Ultra-fast, high-performing structural variation (SV) detector
☆23Updated 2 years ago
Alternatives and similar repositories for ETCHING
Users that are interested in ETCHING are comparing it to the libraries listed below
Sorting:
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 3 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- ☆20Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 3 months ago
- ☆16Updated 4 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Enabling differential allele-specific analysis☆11Updated 5 months ago
- ☆21Updated 2 months ago
- Location of public benchmarking; primarily final results☆18Updated 3 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Updated last year
- An insertion caller for Illumina paired-end WGS data.☆23Updated 10 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 3 weeks ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated 10 months ago
- Population-wide Deletion Calling☆35Updated last month
- A new tool to infer sex from massively parallel sequencing data.☆17Updated 3 weeks ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆24Updated 3 months ago