ETCHING-team / ETCHING
Ultra-fast, high-performing structural variation (SV) detector
☆23Updated last year
Alternatives and similar repositories for ETCHING:
Users that are interested in ETCHING are comparing it to the libraries listed below
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 7 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆29Updated 2 months ago
- ☆21Updated 2 months ago
- Enabling differential allele-specific analysis☆11Updated last month
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated this week
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆16Updated 4 months ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆14Updated 2 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated 6 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 8 months ago
- Location of public benchmarking; primarily final results☆18Updated this week
- v2.x of the microassembly based somatic variant caller☆14Updated last week
- Preprocessing sequencing data for allele-specific analysis☆11Updated 3 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- ☆30Updated 8 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 7 months ago
- Immuological gene typing and annotation for genome assembly☆31Updated 4 months ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- ☆14Updated 7 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- VCF files of SVs using long-read sequencing (LRS).☆21Updated 3 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆11Updated 2 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 11 months ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Updated 3 years ago