Alternatives and similar repositories for ASEReadCounter_star:

Users that are interested in ASEReadCounter_star are comparing it to the libraries listed below

• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 3 months ago
• cortes-ciriano-lab / ReConPlot
  ☆22Updated 4 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated last week
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• XiDsLab / TAGET
  ☆18Updated 2 years ago
• biocorecrg / ExOrthist
  ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.
  ☆22Updated 4 months ago
• AmpliconSuite / CoRAL
  Reconstruction of focal amplifications with long reads
  ☆20Updated 2 weeks ago
• KolmogorovLab / minda
  ☆16Updated this week
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆18Updated last month
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 7 years ago
• a2iEditing / deNovo-Detect
  ☆12Updated 2 years ago
• daewoooo / StrandPhaseR
  R Package for phasing of single cell Strand-seq data
  ☆10Updated 3 months ago
• mortazavilab / cerberus
  ☆19Updated 8 months ago
• asoltis / MutEnricher
  Somatic coding and non-coding mutation enrichment analysis for tumor WGS data
  ☆10Updated 3 years ago
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆14Updated 9 months ago
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆12Updated 3 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• plantformatics / Socrates
  ☆21Updated last month
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆24Updated 9 months ago
• LappalainenLab / lorals_paper_code
  ☆23Updated 2 years ago
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆18Updated last month
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆14Updated last year
• mccoy-lab / t2t-variants
  Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".
  ☆17Updated 2 years ago
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆12Updated last year
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆27Updated last year
• Shians / NanoMethViz
  ☆27Updated last month
• TRON-Bioinformatics / tronflow-alignment
  Nextflow pipeline for BWA, BWA2 and STAR alignments
  ☆12Updated 8 months ago
• akiomiyao / tef
  Transposable Element Finder - Detection of active transposable elements from NGS data
  ☆9Updated 3 weeks ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago