Alternatives and similar repositories for ASEReadCounter_star

Users that are interested in ASEReadCounter_star are comparing it to the libraries listed below

• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 5 months ago
• cortes-ciriano-lab / ReConPlot
  ☆22Updated 6 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 2 months ago
• mccoy-lab / t2t-variants
  Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".
  ☆17Updated 2 years ago
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆14Updated last year
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆42Updated last week
• XiDsLab / TAGET
  ☆19Updated 2 years ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• KolmogorovLab / minda
  ☆19Updated 2 months ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 4 years ago
• Uauy-Lab / WheatHomoeologExpression
  ☆15Updated 5 years ago
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆13Updated 3 years ago
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 4 years ago
• mortazavilab / cerberus
  ☆19Updated 10 months ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆30Updated last month
• mattravenhall / SV-Pop
  Upscaling SV detection to a multi-population level.
  ☆22Updated 4 years ago
• LappalainenLab / lorals_paper_code
  ☆26Updated 3 years ago
• Augroup / miniQuant
  Improving gene isoform quantification with miniQuant
  ☆19Updated last month
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆15Updated last week
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆16Updated last year
• dixonlab / hic_breakfinder
  ☆37Updated 5 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆18Updated 3 months ago
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 8 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆52Updated 10 months ago
• Kingsford-Group / rnaseqtools
  toolkit to process gtf files
  ☆17Updated 3 years ago
• LappalainenLab / lorals
  ☆36Updated 2 years ago
• FemeniasM / ExplorATEproject
  R package to explore active transposable elements with RNA-seq data
  ☆20Updated 2 years ago
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆11Updated last year