Preprocessing sequencing data for allele-specific analysis
☆12Mar 11, 2025Updated last year
Alternatives and similar repositories for ASEReadCounter_star
Users that are interested in ASEReadCounter_star are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 4 years ago
- Analyses of sex chromosome evolution in songbirds☆17Jun 15, 2019Updated 6 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆26Sep 21, 2018Updated 7 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data☆28Feb 4, 2017Updated 9 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- ☆11Dec 1, 2020Updated 5 years ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 5 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Dec 19, 2023Updated 2 years ago
- Full GATK SNP calling pipeline☆24Oct 30, 2025Updated 4 months ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- ☆32Jun 15, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆16Jan 15, 2025Updated last year
- A phenotype-based tool for variant prioritization in WES and WGS data☆42Nov 21, 2022Updated 3 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Mar 10, 2026Updated 2 weeks ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- ☆33Nov 6, 2022Updated 3 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated last year
- GBWT-based handle graph☆31Mar 17, 2026Updated last week
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- A python parser to simplify and build the VCF (Variant Call Format).☆49Oct 30, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package for haplotype phasing using single-cell RNA-seq data☆13Aug 22, 2017Updated 8 years ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 2 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Variant Graph Craft (VGC) is an interactive genomic variant visualization program.☆16May 17, 2024Updated last year
- Tools for working with Variant Call Format files.☆12Jan 22, 2026Updated 2 months ago
- a bioinformatics tool for simulating single-cell genome sequencing data☆10Dec 19, 2019Updated 6 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- ☆10Jan 27, 2025Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆28Apr 11, 2025Updated 11 months ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆13Oct 7, 2025Updated 5 months ago
- ☆13Apr 18, 2022Updated 3 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Apr 10, 2024Updated last year
- Finds DAMEs - Differential Allelicly MEthylated regions☆10Jul 29, 2025Updated 7 months ago
- ☆13Oct 2, 2019Updated 6 years ago
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago