sort genomic data
☆36Nov 7, 2025Updated 4 months ago
Alternatives and similar repositories for gsort
Users that are interested in gsort are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 9 months ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Mar 10, 2026Updated 2 weeks ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- ☆36Aug 13, 2020Updated 5 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 8 years ago
- Gene lists related to cancer immunotherapy☆14Sep 11, 2024Updated last year
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 9 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- A lightweight Python graphing API for genomic features☆15Jul 8, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆12Feb 19, 2017Updated 9 years ago
- Fast HLA type inference from whole-genome data☆143Apr 3, 2025Updated 11 months ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- ☆23Jun 5, 2021Updated 4 years ago
- Graph realignment tools for structural variants☆166Dec 8, 2022Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 5 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- vcf file manipulation☆22Jul 9, 2015Updated 10 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- Deep learning-based structural variant filtering method☆39Nov 19, 2023Updated 2 years ago
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- ☆21Dec 26, 2025Updated 3 months ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆179Apr 12, 2024Updated last year
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago