brentp / gsort
sort genomic data
☆35Updated 4 years ago
Alternatives and similar repositories for gsort:
Users that are interested in gsort are comparing it to the libraries listed below
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- simple library for dealing with SAM cigar strings☆40Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- Simplify snpEff annotations for interesting cases☆21Updated 5 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 7 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 7 months ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Structural variant (SV) analysis tools☆35Updated 6 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Adapters for trimming☆30Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 6 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 7 months ago
- Immuological gene typing and annotation for genome assembly☆31Updated 2 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago