brentp / gsortLinks
sort genomic data
☆36Updated 2 months ago
Alternatives and similar repositories for gsort
Users that are interested in gsort are comparing it to the libraries listed below
Sorting:
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 5 years ago
- ☆36Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Updated 3 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago