Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
☆21Dec 8, 2020Updated 5 years ago
Alternatives and similar repositories for cacao
Users that are interested in cacao are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cancer Predisposition Sequencing Reporter (CPSR)☆67Aug 16, 2026Updated 2 weeks ago
- Explore the cancer relevance of your gene list☆56Aug 11, 2026Updated 3 weeks ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated last week
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Targeted and non-targeted anticancer drugs and drug regimens☆31Aug 3, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- FInding REliable Variants without ArTifacts☆23Nov 18, 2022Updated 3 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆19Dec 28, 2022Updated 3 years ago
- Rocking R at UMCCR☆10Oct 11, 2020Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- Genomic VCF to tab-separated values☆50May 23, 2026Updated 3 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Structural Variant Prediction Viewer☆36Jul 19, 2017Updated 9 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated last year
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46May 1, 2026Updated 4 months ago
- Personal Cancer Genome Reporter (PCGR)☆283Aug 26, 2026Updated last week
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 7 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆13May 5, 2026Updated 3 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Updated this week
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆109Dec 14, 2020Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆50Nov 20, 2023Updated 2 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆38Aug 9, 2019Updated 7 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated last month
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 4 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Aug 14, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆22May 11, 2018Updated 8 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆267Jun 17, 2024Updated 2 years ago
- R package for generating beautiful and customizable plots for the exons and introns of any gene☆12Jul 26, 2021Updated 5 years ago
- vembrane filters, sorts, and transforms VCF records using python expressions☆70Updated this week