sigven / cacaoLinks
Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
☆21Updated 4 years ago
Alternatives and similar repositories for cacao
Users that are interested in cacao are comparing it to the libraries listed below
Sorting:
- v2.x of the microassembly based somatic variant caller☆23Updated 4 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 8 months ago
- DRAGEN Tumor/Normal workflow post-processing☆23Updated 2 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Allele frequency filter app☆14Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 2 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Filter and prioritize fusion calls☆20Updated last year
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated last month
- ☆11Updated 7 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated last month
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- Unfazed by genomic variant phasing☆27Updated last year
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆15Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago