Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
☆21Dec 8, 2020Updated 5 years ago
Alternatives and similar repositories for cacao
Users that are interested in cacao are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Mar 17, 2026Updated last week
- Explore the cancer relevance of your gene list☆53Dec 17, 2025Updated 3 months ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Mar 10, 2026Updated 2 weeks ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Targeted and non-targeted anticancer drugs and drug regimens☆30Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 4 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆16Dec 28, 2022Updated 3 years ago
- Rocking R at UMCCR☆10Oct 11, 2020Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- Genomic VCF to tab-separated values☆48Mar 9, 2023Updated 3 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Microsatellite Instability Classification using Multiple Instance Learning☆28Mar 3, 2025Updated last year
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 9 months ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Dec 17, 2025Updated 3 months ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- Personal Cancer Genome Reporter (PCGR)☆274Mar 17, 2026Updated last week
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 6 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆13Feb 10, 2026Updated last month
- Deep learning-based structural variant filtering method☆39Nov 19, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Updated this week
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 7 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated this week
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 3 years ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆50Nov 20, 2023Updated 2 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Aug 9, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 4 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆21Oct 30, 2025Updated 4 months ago
- ☆13Jan 23, 2020Updated 6 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- vembrane filters VCF records using python expressions☆69Mar 17, 2026Updated last week
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20May 11, 2018Updated 7 years ago
- Characterization of Germline variants☆100Mar 15, 2022Updated 4 years ago