sigven / cacaoLinks
Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
☆21Updated 4 years ago
Alternatives and similar repositories for cacao
Users that are interested in cacao are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 2 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- Allele frequency filter app☆14Updated 3 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 3 weeks ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- ☆11Updated 7 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago
- ☆21Updated 3 weeks ago
- ☆13Updated 2 weeks ago
- Filter and prioritize fusion calls☆20Updated 11 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated this week
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- Reducing reference bias using multiple population reference genomes☆33Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago