PersonalizedOncology / ClinVAPLinks
Clinical Variant Annotation Pipeline
☆10Updated 5 years ago
Alternatives and similar repositories for ClinVAP
Users that are interested in ClinVAP are comparing it to the libraries listed below
Sorting:
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- amplicon/smMIP mapping and analysis pipeline☆11Updated 2 years ago
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Updated last year
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆13Updated 2 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 4 months ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- ☆12Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last week
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- ☆11Updated 2 years ago
- ☆21Updated 2 months ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated 2 weeks ago
- v2.x of the microassembly based somatic variant caller☆24Updated last week
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Updated 6 months ago