Clinical Variant Annotation Pipeline
☆10Apr 21, 2020Updated 6 years ago
Alternatives and similar repositories for ClinVAP
Users that are interested in ClinVAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for generating beautiful and customizable plots for the exons and introns of any gene☆12Jul 26, 2021Updated 5 years ago
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated last year
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆19Dec 28, 2022Updated 3 years ago
- Exome Copy Number Variation Polisher via Deep Learning☆18Jun 1, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆67Oct 24, 2026Updated last week
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆15May 16, 2026Updated 5 months ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated 2 months ago
- CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer☆31Updated this week
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Blazingly fast, streaming duplicate detection for NGS data☆22Oct 22, 2026Updated last week
- Targeted and non-targeted anticancer drugs and drug regimens☆31Oct 22, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- NiPTUNE. A Python library for NIPT analyses.☆11Nov 22, 2021Updated 4 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Time to learn DSL2☆10Feb 9, 2023Updated 3 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- myVCF: a web-based platform for target and exome mutations data management☆21Apr 13, 2021Updated 5 years ago
- Tutorial on survival modeling with omics data☆12May 6, 2026Updated 5 months ago
- do some exercise☆15Dec 2, 2025Updated 11 months ago
- RNA-seq analysis scripts☆18Jan 8, 2026Updated 9 months ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆17Aug 9, 2018Updated 8 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆18Jul 21, 2026Updated 3 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 8 years ago
- FInding REliable Variants without ArTifacts☆21Nov 18, 2022Updated 3 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Feb 14, 2023Updated 3 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Feb 20, 2026Updated 8 months ago
- ☆16Jun 2, 2021Updated 5 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- Pipeline for analysis of Dropseq single cell data☆11Nov 14, 2024Updated last year
- ☆10Jan 25, 2019Updated 7 years ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆20Jul 15, 2026Updated 3 months ago