Alternatives and similar repositories for ClinVAP

Users that are interested in ClinVAP are comparing it to the libraries listed below

• beroukhim-lab / ascets
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…
  ☆16Updated last year
• NCBI-Hackathons / HLAClustRView
  R package specialized in HLA typing clustering and visualization based on specific similarity metrics
  ☆13Updated 5 years ago
• VCCRI / dv-trio
  dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…
  ☆11Updated 4 years ago
• bio-ontology-research-group / DeepSVP
  Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity
  ☆16Updated 3 years ago
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated 2 years ago
• rhshah / iAnnotateSV
  iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…
  ☆16Updated 2 weeks ago
• sigven / cacao
  Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
  ☆21Updated 4 years ago
• koelling / amplimap
  amplicon/smMIP mapping and analysis pipeline
  ☆11Updated 2 years ago
• yuansliu / minirmd
  ☆12Updated 2 years ago
• RausellLab / CNVxplorer
  A webtool for the clinical interpretation of CNVs in rare disease patients
  ☆12Updated 3 years ago
• TranslationalBioinformaticsIGTP / CNVbenchmarkeR
  Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data
  ☆14Updated 8 months ago
• beroukhim-lab / BISCUT-py3
  ☆12Updated last year
• PreMedKB / PAnno
  PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.
  ☆14Updated 2 years ago
• cancer-genomics / gemini_wflow
  ☆10Updated 2 years ago
• mazzalab-ieo / recallme
  Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer
  ☆13Updated last year
• HurlesGroupSanger / DeNovoWEST
  ☆21Updated last week
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated 3 weeks ago
• ImperialCardioGenetics / frequencyFilter
  Allele frequency filtering for Mendelian variant discovery
  ☆18Updated 8 years ago
• parklab / MSIprofiler
  Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data
  ☆20Updated last year
• sirselim / diagnostics_exome_reporting
  Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.
  ☆14Updated 5 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 5 months ago
• polyactis / Accucopy
  Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…
  ☆17Updated last year
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 10 months ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆18Updated 2 weeks ago
• ETCHING-team / ETCHING
  Ultra-fast, high-performing structural variation (SV) detector
  ☆23Updated 2 years ago
• HurlesGroupSanger / indelible
  Structural Variation breakpoint discovery via adaptive learning
  ☆16Updated 2 years ago
• smped / ngsReports
  ☆23Updated 2 months ago
• caravagnalab / CNAqc
  CNAqc - Copy Number Alteration (CNA) Quality Check package
  ☆22Updated 3 months ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• FischerJo / FAME
  ☆14Updated 2 years ago