jiujiezz / tsnadLinks
Detecting somatic mutations and predicting tumor-specific neo-antigens
☆29Updated 4 years ago
Alternatives and similar repositories for tsnad
Users that are interested in tsnad are comparing it to the libraries listed below
Sorting:
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆19Updated 7 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆20Updated last month
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Python package to annotate and visualize gene fusions.☆64Updated last year
- ☆18Updated 4 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- Published at Bioinformatics☆12Updated last year
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated last year
- ☆15Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- ☆13Updated last year
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15Updated 10 years ago
- cnv-seq with custom bugfix☆10Updated 12 years ago
- DriverPower☆26Updated 8 months ago
- Snakemake workflow for neoantigen prediction☆14Updated 2 years ago
- RAGE-seq scripts☆18Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- Codes and Data for FFPEsig manuscript☆17Updated last year