jiujiezz / tsnadLinks
Detecting somatic mutations and predicting tumor-specific neo-antigens
☆29Updated 4 years ago
Alternatives and similar repositories for tsnad
Users that are interested in tsnad are comparing it to the libraries listed below
Sorting:
- ☆19Updated 7 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Workflow for Sequenza, cellularity and ploidy☆20Updated last week
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 5 years ago
- ☆18Updated 3 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- DriverPower☆26Updated 6 months ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Python package to annotate and visualize gene fusions.☆64Updated 10 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Published at Bioinformatics☆12Updated last year
- Codes and Data for FFPEsig manuscript☆17Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 10 months ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- Filters for false-positive mutation calls in NGS☆31Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- simplified cellranger for long-read data☆19Updated 3 months ago
- Comprehensive Human Expressed SequenceS☆18Updated 3 weeks ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- Snakemake workflow for neoantigen prediction☆14Updated last year
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated 2 months ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago