GooglingTheCancerGenome / sv-channels

Related projects: ⓘ

• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 2 years ago
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆23Updated 4 months ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆43Updated 2 years ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆25Updated 3 months ago
• fakedrtom / SVAFotate
  ☆38Updated last week
• kcleal / SV_Benchmark_CMRG
  Structural variant benchmark of challenging medically relevant genes
  ☆16Updated last year
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆27Updated 2 months ago
• brentp / seqcover
  seqcover allows users to view coverage for hundreds of genes and dozens of samples
  ☆50Updated 3 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆53Updated last week
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆30Updated 7 years ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆28Updated last year
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆56Updated 2 years ago
• kensung-lab / INSurVeyor
  An insertion caller for Illumina paired-end WGS data.
  ☆21Updated last month
• Sentieon / sentieon-models
  Model files for Sentieon variant callers
  ☆12Updated last month
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆14Updated 3 weeks ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆34Updated 2 weeks ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 2 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆27Updated last year
• dermasugita / Viola-SV
  Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.
  ☆25Updated last month
• HurlesGroupSanger / DeNovoWEST
  ☆21Updated last month
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆26Updated 6 months ago
• huangnengCSU / longcallR
  LongcallR is a small variant caller for single molecule long-read RNA-seq data
  ☆40Updated last week
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆20Updated 4 months ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 3 months ago
• UCSC-nanopore-cgl / margin
  ☆27Updated last year
• EliseCoopman / methylmap
  Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.
  ☆18Updated last week
• LappalainenLab / lorals
  ☆31Updated last year
• genepi / haplocheck
  Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies
  ☆16Updated last year
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 6 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 2 years ago