GooglingTheCancerGenome / sv-channelsLinks
Deep learning-based structural variant filtering method
☆39Updated last year
Alternatives and similar repositories for sv-channels
Users that are interested in sv-channels are comparing it to the libraries listed below
Sorting:
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆30Updated 2 weeks ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated last year
- ☆51Updated 6 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 6 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- (WIP) best-practices workflow for rare disease☆60Updated last year
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 6 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 months ago
- ☆35Updated 4 years ago
- Location of public benchmarking; primarily final results☆18Updated 6 months ago
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated 2 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆30Updated 4 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 5 years ago
- ☆44Updated 11 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Sample Contamination Estimate from VCF☆20Updated 9 months ago
- Immuological gene typing and annotation for genome assembly☆37Updated 5 months ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- A variant caller for the GBA gene using WGS data☆22Updated last year
- ☆23Updated 4 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 6 months ago