Deep learning-based structural variant filtering method
☆40Nov 19, 2023Updated 2 years ago
Alternatives and similar repositories for sv-channels
Users that are interested in sv-channels are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 11 months ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆33Aug 18, 2025Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Feb 14, 2025Updated last year
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆37Oct 14, 2025Updated 6 months ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- vembrane filters VCF records using python expressions☆70Apr 13, 2026Updated 3 weeks ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 3 months ago
- v2.x of the microassembly based somatic variant caller☆27Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated last year
- (WIP) best-practices workflow for rare disease☆62Jul 1, 2024Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆12Apr 15, 2026Updated 3 weeks ago
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 3 years ago
- Toolkit for calling structural variants using short or long reads☆115Apr 28, 2026Updated last week
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- expressions on VCFs☆91Mar 17, 2026Updated last month
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Apr 17, 2026Updated 2 weeks ago
- seqfu - Sequece Fastx Utilities☆126Apr 17, 2026Updated 2 weeks ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆64Updated this week
- Graph realignment tools for structural variants☆167Dec 8, 2022Updated 3 years ago
- sort genomic data☆36Nov 7, 2025Updated 6 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- A simple observation count database☆11Jan 13, 2026Updated 3 months ago
- Thousand Variant Callers Project Repository☆73Oct 17, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆59Apr 27, 2026Updated last week
- Jasmine: SV Merging Across Samples☆251Dec 20, 2024Updated last year
- structural variant database software☆48Apr 21, 2026Updated 2 weeks ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 8 months ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- A structural variation pipeline for short-read sequencing☆202Updated this week
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated last month