GooglingTheCancerGenome / sv-channelsLinks
Deep learning-based structural variant filtering method
☆39Updated last year
Alternatives and similar repositories for sv-channels
Users that are interested in sv-channels are comparing it to the libraries listed below
Sorting:
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 7 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- ☆44Updated last year
- ☆23Updated 9 months ago
- ☆24Updated 5 months ago
- Structural variant (SV) analysis tools☆38Updated last year
- v2.x of the microassembly based somatic variant caller☆23Updated 2 months ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated last month
- ☆35Updated 4 years ago
- ☆31Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18Updated last year
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- ☆51Updated 6 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 4 months ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 7 months ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- ☆38Updated 2 years ago
- A variant caller for the GBA gene using WGS data☆22Updated last year
- ☆29Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆53Updated last week
- Python package and routines for merging VCF files☆29Updated 4 years ago