Deep learning-based structural variant filtering method
☆40Nov 19, 2023Updated 2 years ago
Alternatives and similar repositories for sv-channels
Users that are interested in sv-channels are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆38Sep 13, 2023Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Snakemake-based workflow for detecting structural variants in genomic data☆84Feb 14, 2025Updated last year
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- vembrane filters, sorts, and transforms VCF records using python expressions☆70Oct 6, 2026Updated last week
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 8 months ago
- Structural variant VCF annotation, filtering, duplicate removal and comparison☆38Sep 3, 2026Updated last month
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- (WIP) best-practices workflow for rare disease☆64Jul 1, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- don't get DUP'ed or DEL'ed by your putative SVs.☆109Dec 14, 2020Updated 5 years ago
- Structural variant (SV) analysis tools☆42Jul 1, 2024Updated 2 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆66Updated this week
- Ultra-fast, high-performing structural variation (SV) detector☆25Apr 26, 2023Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- Toolkit for calling structural variants using short or long reads☆119Aug 21, 2026Updated last month
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 6 months ago
- expressions on VCFs☆94Sep 25, 2026Updated 3 weeks ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Jun 6, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- seqfu - Sequece Fastx Utilities☆132Updated this week
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Sep 9, 2026Updated last month
- Graph realignment tools for structural variants☆172Dec 8, 2022Updated 3 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated last month
- sort genomic data☆36Nov 7, 2025Updated 11 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆59Sep 9, 2026Updated last month
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A simple observation count database☆11Sep 30, 2026Updated 2 weeks ago
- TIDDIT - structural variant calling☆80Jul 20, 2026Updated 2 months ago
- Jasmine: SV Merging Across Samples☆262Dec 20, 2024Updated last year
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 7 months ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆36Aug 18, 2025Updated last year
- Thousand Variant Callers Project Repository☆75Oct 17, 2019Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆59Feb 17, 2022Updated 4 years ago