Alternatives and similar repositories for Slinker

Users that are interested in Slinker are comparing it to the libraries listed below

• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 2 months ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆35Updated last year
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆25Updated 2 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• databio / GenomicDistributions
  Calculate and plot distributions of genomic ranges
  ☆26Updated 4 months ago
• jmw86069 / splicejam
  Sashimi plots for RNA-seq data using detected transcripts
  ☆29Updated 5 months ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 4 years ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆43Updated 2 months ago
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆29Updated 7 months ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆44Updated this week
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆37Updated last year
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• hoffmangroup / umap
  ☆26Updated last month
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆46Updated 5 months ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 10 months ago
• Xinglab / rMATS-long
  ☆31Updated 8 months ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 7 months ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 3 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆20Updated last week
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 5 months ago
• COMBINE-lab / wasabi
  Prepare Sailfish and Salmon output for downstream analysis
  ☆42Updated 6 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• parklab / MuSiCal
  A comprehensive toolkit for mutational signature analysis
  ☆41Updated last year
• smangul1 / rop
  The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…
  ☆36Updated last year
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆18Updated last month
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆19Updated 4 months ago
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆23Updated last month
• brianyiktaktsui / Skymap
  High-throughput gene to knowledge mapping through massive integration of public sequencing data.
  ☆31Updated 6 years ago
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆22Updated last year