Oshlack / SlinkerLinks
Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
☆19Updated 2 years ago
Alternatives and similar repositories for Slinker
Users that are interested in Slinker are comparing it to the libraries listed below
Sorting:
- interactive plots for differential expression analysis☆32Updated 2 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 11 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated last week
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated 2 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆35Updated 2 weeks ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- ☆28Updated 5 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Filter and prioritize fusion calls☆20Updated 8 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- A program for the analysis of single cell nanopore long read data☆19Updated 2 months ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated 4 months ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 8 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 weeks ago
- Snakemake pipeline for running MAJIQ☆22Updated last year
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆13Updated last month
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- iread☆24Updated 3 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 3 weeks ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 7 months ago
- Useful tools for working with Salmon output☆38Updated 4 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago