Oshlack / Slinker
Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
☆19Updated 2 years ago
Alternatives and similar repositories for Slinker:
Users that are interested in Slinker are comparing it to the libraries listed below
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- interactive plots for differential expression analysis☆29Updated this week
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 7 months ago
- Filter and prioritize fusion calls☆20Updated 4 months ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated last week
- Differential ATAC-seq toolkit☆27Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- ☆27Updated 2 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 3 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 11 months ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆14Updated 2 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆24Updated last month
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 2 weeks ago
- Chromatin segmentation in R☆19Updated 7 years ago
- a set of NGS pipelines☆24Updated this week
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- ☆21Updated 3 weeks ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated 2 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆22Updated 2 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Two pass alignment for long reads☆21Updated 3 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Genomic data interpretation and visualization Workshop☆19Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- ☆19Updated 2 months ago
- iread☆23Updated 3 years ago
- Calculate and plot distributions of genomic ranges☆26Updated 9 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 6 months ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated 7 months ago