BenLangmead / qtipLinks
Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
☆25Updated 5 years ago
Alternatives and similar repositories for qtip
Users that are interested in qtip are comparing it to the libraries listed below
Sorting:
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- ☆36Updated 5 years ago
- reference free variant assembly☆34Updated 2 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 10 months ago
- ☆13Updated 8 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- ☆14Updated last month
- full taxonomer cython repository☆22Updated 5 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago