BenLangmead / qtip
Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
☆25Updated 5 years ago
Alternatives and similar repositories for qtip:
Users that are interested in qtip are comparing it to the libraries listed below
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 11 months ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago
- ☆19Updated 8 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- ☆25Updated 4 years ago
- ☆13Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Updated 6 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆12Updated 6 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- Graphical assessment of structrial variants using 10x genomics data☆10Updated 8 years ago
- ☆16Updated 7 years ago