BenLangmead / qtipLinks
Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
☆25Updated 5 years ago
Alternatives and similar repositories for qtip
Users that are interested in qtip are comparing it to the libraries listed below
Sorting:
- What's The Function of these genes?☆22Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago
- reference free variant assembly☆33Updated 2 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆37Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- ☆13Updated 8 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 7 months ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 11 months ago
- Integrated Variant Caller☆17Updated 7 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13Updated 6 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- sort genomic data☆35Updated 5 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year