Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation
☆26Jul 17, 2026Updated last week
Alternatives and similar repositories for CNAqc
Users that are interested in CNAqc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jan 21, 2023Updated 3 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Model-based tumour subclonal deconvolution using population genetics☆36Dec 2, 2025Updated 7 months ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated 5 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆19Apr 16, 2026Updated 3 months ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Jul 12, 2026Updated 2 weeks ago
- anor: an annotation and visualization system based on R and Shiny framework☆33Apr 20, 2020Updated 6 years ago
- ☆11Apr 25, 2024Updated 2 years ago
- ☆13Apr 16, 2026Updated 3 months ago
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- ☆18Jan 30, 2023Updated 3 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast method for inferring cancer clonal population structure from SNV data.☆75Jan 20, 2026Updated 6 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆44Apr 18, 2024Updated 2 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Jan 28, 2022Updated 4 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆44Aug 21, 2025Updated 11 months ago
- Codes and Data for FFPEsig manuscript☆17Jan 17, 2024Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆101Updated this week
- Total copy number inference from single-cell RNA and ATAC sequing with cell clustering☆12Oct 31, 2024Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 7 years ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Jun 18, 2026Updated last month
- An R package for predicting HR deficiency from mutation contexts☆30Feb 13, 2025Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆38Oct 14, 2025Updated 9 months ago
- A set of tools to annotate VCF files with expression and readcount data☆31Updated this week
- Curated list of TCGA resources☆61Nov 10, 2017Updated 8 years ago
- Quantifying copy number signatures from absolute copy number profiles☆29Jul 23, 2025Updated last year
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Apr 8, 2022Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- Multi-sample cancer phylogeny reconstruction☆36Oct 19, 2017Updated 8 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Jul 2, 2026Updated 3 weeks ago
- ASCAT R package☆203Feb 12, 2026Updated 5 months ago
- DriverPower☆26Jan 18, 2025Updated last year
- Pan gGnome Viewer☆10Jul 10, 2025Updated last year