caravagnalab / CNAqcLinks
CNAqc - Copy Number Alteration (CNA) Quality Check package
☆22Updated 3 months ago
Alternatives and similar repositories for CNAqc
Users that are interested in CNAqc are comparing it to the libraries listed below
Sorting:
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- ☆12Updated last year
- DriverPower☆26Updated 7 months ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Python function for TMB snake plots☆16Updated 5 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Filter and prioritize fusion calls☆20Updated 10 months ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last week
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- ☆18Updated 4 years ago
- iread☆25Updated 4 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- ☆17Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆13Updated last month
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 2 weeks ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆27Updated 10 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆20Updated last week
- Utility functions for FACETS☆38Updated last year
- ☆31Updated 8 months ago