hms-dbmi / GenoPheno-CatalogShinyLinks
Shiny app for geno-pheno catalog
☆11Updated 2 years ago
Alternatives and similar repositories for GenoPheno-CatalogShiny
Users that are interested in GenoPheno-CatalogShiny are comparing it to the libraries listed below
Sorting:
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Comprehensive Human Expressed SequenceS☆18Updated 2 months ago
- Refining the impact of genetic evidence on clinical success☆26Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆17Updated last year
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆12Updated 5 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 5 months ago
- GWAS and rare variants tests at high speed using regenie☆15Updated 9 months ago
- ☆12Updated 4 years ago
- VirusScan Pipeline☆11Updated 7 months ago
- amplicon/smMIP mapping and analysis pipeline☆11Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 years ago
- Generate Novel Insights from Gene Correlation Data☆12Updated 3 years ago
- ☆12Updated last year
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated 2 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- Python function for TMB snake plots☆16Updated 5 years ago
- cfDNA analysis workflow☆21Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated last week
- Ａ user-friendly Python toolkit, which provides a comprehensive pipeline to easily explore the cohort-based mutational characterization fo…☆22Updated 2 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Updated 5 months ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- Phenome Exome Association and Correlation Of Key phenotypes☆27Updated 4 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆18Updated 2 years ago
- Filter and prioritize fusion calls☆20Updated 11 months ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 4 years ago