chaolongwang / SEEKIN
SEEKIN: SEquence-based Estimation of KINship
☆14Updated 6 years ago
Related projects: ⓘ
- Experimental EIGENSOFT performance improvements.☆21Updated 9 years ago
- ☆11Updated last year
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆14Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆19Updated 2 years ago
- Unfazed by genomic variant phasing☆26Updated 3 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- Reducing reference bias using multiple population reference genomes☆31Updated 3 months ago
- Interactive table from gemini output☆10Updated 5 years ago
- Functions to compare a SV call sets against a truth set.☆25Updated 4 months ago
- SNP genotyping in polyploids☆15Updated 4 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆19Updated last year
- All JBrowse plugins created by Brigitte Hofmeister☆10Updated 6 years ago
- Population-wide Deletion Calling☆34Updated 2 weeks ago
- a Shiny/R application to view and annotate copy number variations☆28Updated last year
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- EM-PCA for Ultra-low Coverage Sequencing Data☆16Updated 3 months ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 5 years ago
- ☆10Updated this week
- ☆23Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- A command line tool to compute mapping statistics from a BAM file☆21Updated 2 years ago
- fastq quality assessment and filtering tool☆18Updated last year
- Work for the tree sequence inference paper.☆23Updated 3 years ago
- Split a BAM file by haplotype support☆16Updated 6 years ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆13Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 3 years ago
- v2.x of the microassembly based somatic variant caller☆14Updated 3 weeks ago
- Pan gGnome Viewer☆10Updated 7 months ago