Alternatives and similar repositories for spliceclust

Users that are interested in spliceclust are comparing it to the libraries listed below

• beroukhim-lab / ascets
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…
  ☆18Updated 2 years ago
• mskilab-org / gTrack
  R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework
  ☆17Updated last year
• viq854 / lichee
  Multi-sample cancer phylogeny reconstruction
  ☆36Updated 8 years ago
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 2 weeks ago
• koesterlab / microphaser
  ☆11Updated 2 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• sigven / cacao
  Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
  ☆21Updated 5 years ago
• skandlab / SMuRF
  ☆22Updated last year
• caravagnalab / mobster
  Model-based tumour subclonal deconvolution using population genetics
  ☆34Updated 2 months ago
• umccr / RNAsum
  Pipeline for generating RNAseq-based cancer patient reports
  ☆11Updated last week
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆41Updated 3 years ago
• databio / bedshift
  Bedfile perturbation tool
  ☆17Updated 4 months ago
• elyadlezmi / RNA2CM
  Pipeline for the identification of cancer-related mutations from RNA-seq data
  ☆14Updated 4 years ago
• NCBI-Hackathons / HLAClustRView
  R package specialized in HLA typing clustering and visualization based on specific similarity metrics
  ☆14Updated 6 years ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆20Updated last week
• caravagnalab / CNAqc
  Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation
  ☆25Updated 2 weeks ago
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆42Updated last year
• slowkow / cellguide
  🧭 Navigate single-cell RNA-seq datasets in your web browser.
  ☆30Updated 2 years ago
• MathOnco / EvoFreq
  Evolutionary frequency visualization tool of temporal data
  ☆24Updated 4 years ago
• trichelab / MTseeker
  mitochondrial variant analysis tools
  ☆15Updated 4 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆30Updated last week
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆21Updated 4 years ago
• SigProfilerSuite / TMB_plotter
  Python function for TMB snake plots
  ☆16Updated 5 years ago
• beroukhim-lab / BISCUT-py3
  ☆11Updated last year
• smshuai / DriverPower
  DriverPower
  ☆26Updated last year
• carjed / helmsman
  highly-efficient & lightweight mutation signature matrix aggregation
  ☆19Updated 4 years ago
• shahcompbio / timescape
  Visualization tool for temporal clonal evolution.
  ☆18Updated 5 years ago
• PoisonAlien / somaticfreq
  knowledge-based genotyping of cancer hotspots from the tumor BAM files
  ☆21Updated 4 years ago
• openvax / isovar
  Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence
  ☆25Updated last year
• ju-lab / LungCancer_SV_timing_analyses
  ☆12Updated 5 years ago