Alternatives and similar repositories for spliceclust

Users that are interested in spliceclust are comparing it to the libraries listed below

• beroukhim-lab / ascets
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…
  ☆18Updated last year
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated last year
• mskilab-org / gTrack
  R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework
  ☆17Updated 10 months ago
• PoisonAlien / somaticfreq
  knowledge-based genotyping of cancer hotspots from the tumor BAM files
  ☆21Updated 3 years ago
• caravagnalab / CNAqc
  Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation
  ☆23Updated last month
• skandlab / SMuRF
  ☆22Updated 9 months ago
• AlexandrovLab / TMB_plotter
  Python function for TMB snake plots
  ☆16Updated 5 years ago
• viq854 / lichee
  Multi-sample cancer phylogeny reconstruction
  ☆35Updated 8 years ago
• NCBI-Hackathons / HLAClustRView
  R package specialized in HLA typing clustering and visualization based on specific similarity metrics
  ☆14Updated 5 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• koesterlab / microphaser
  ☆11Updated 2 years ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆19Updated last month
• MathOnco / EvoFreq
  Evolutionary frequency visualization tool of temporal data
  ☆23Updated 3 years ago
• HTGenomeAnalysisUnit / nf-pipeline-regenie
  GWAS and rare variants tests at high speed using regenie
  ☆15Updated 2 weeks ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 9 months ago
• sigven / cacao
  Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
  ☆21Updated 4 years ago
• caravagnalab / mobster
  Model-based tumour subclonal deconvolution using population genetics
  ☆33Updated 2 months ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated last year
• trichelab / MTseeker
  mitochondrial variant analysis tools
  ☆15Updated 4 years ago
• broadinstitute / CODECsuite
  analysis pipeline for CODEC data
  ☆12Updated 2 weeks ago
• genemine / iread
  iread
  ☆25Updated 4 years ago
• elyadlezmi / RNA2CM
  Pipeline for the identification of cancer-related mutations from RNA-seq data
  ☆14Updated 4 years ago
• parklab / MSIprofiler
  Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data
  ☆20Updated last year
• marcjwilliams1 / SubClonalSelection.jl
  Inferring selection in cancer sequencing data using ABC and population based simulations
  ☆11Updated 4 years ago
• beroukhim-lab / BISCUT-py3
  ☆12Updated last year
• bioinform / ecTMB
  ☆18Updated 4 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 8 months ago
• ju-lab / LungCancer_SV_timing_analyses
  ☆12Updated 5 years ago
• annaquaglieri16 / varikondo
  R package to organise and standardise your genomic variant calls obtained with different callers.
  ☆11Updated 6 years ago
• kircherlab / cfDNA
  cfDNA analysis workflow
  ☆22Updated 2 years ago