openvax / isovarLinks
Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence
☆25Updated 8 months ago
Alternatives and similar repositories for isovar
Users that are interested in isovar are comparing it to the libraries listed below
Sorting:
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 2 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- simplified cellranger for long-read data☆19Updated 2 months ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores☆8Updated 9 years ago
- ☆13Updated 7 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- BAGEL software☆27Updated last year
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated last month
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Explore the cancer relevance of your gene list☆51Updated 3 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- Filter and prioritize fusion calls☆20Updated 8 months ago