Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence
☆25Oct 4, 2024Updated last year
Alternatives and similar repositories for isovar
Users that are interested in isovar are comparing it to the libraries listed below
Sorting:
- Library for manipulating genomic variants and predicting their effects☆86Feb 16, 2026Updated 2 weeks ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Feb 26, 2026Updated last week
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 2 months ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆61Feb 10, 2026Updated 3 weeks ago
- Python package to annotate and visualize gene fusions.☆65Sep 30, 2024Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 2 years ago
- ☆12Jan 29, 2025Updated last year
- Variant to disease dataset workflows for Open Targets Genetics☆13Aug 23, 2022Updated 3 years ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Jan 7, 2022Updated 4 years ago
- CWL for GDC DNASeq workflows☆23Feb 26, 2026Updated last week
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Example project for integrating igv.js and flask☆26May 17, 2025Updated 9 months ago
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- A web tool that helps biomedical researchers understand how their work is being used by others, by analyzing the content in papers that c…☆13Oct 19, 2018Updated 7 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Jul 7, 2018Updated 7 years ago
- Analysis pipeline for cancer sequencing data☆112Apr 30, 2025Updated 10 months ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Feb 12, 2026Updated 3 weeks ago
- ☆11Apr 25, 2024Updated last year
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31May 8, 2018Updated 7 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 8 months ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Nov 25, 2025Updated 3 months ago
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆13Mar 15, 2019Updated 6 years ago
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 7 years ago
- SV☆14May 3, 2018Updated 7 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- A Boolean Algebra for Genetic Variants☆12Updated this week
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- ☆13Jun 24, 2016Updated 9 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Jan 7, 2025Updated last year
- Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:☆17Jul 22, 2024Updated last year
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 6 years ago
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 4 years ago