Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence
☆27Nov 2, 2026Updated this week
Alternatives and similar repositories for isovar
Users that are interested in isovar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Library for manipulating genomic variants and predicting their effects☆87Updated this week
- Ranked vaccine peptides for personalized cancer immunotherapy☆68Updated this week
- Published at Bioinformatics☆12Jul 4, 2024Updated 2 years ago
- commandline manipulation of genomic variants and NGS reads☆21Updated this week
- Python pipeline for analysis of SafeSeqS DNA sequencing data.☆11Apr 2, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- Python package to annotate and visualize gene fusions.☆67Updated this week
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 3 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 7 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 8 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 7 years ago
- Flexible gene set enrichment analysis☆11Aug 30, 2021Updated 5 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated 2 months ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆79Jan 13, 2026Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Curated list of TCGA resources☆61Nov 10, 2017Updated 8 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 4 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 5 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- ☆17Mar 22, 2022Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 4 months ago
- predicting peptide and TCR interaction☆19Jan 27, 2021Updated 5 years ago
- small RNA analysis from NGS data☆39Sep 6, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Jul 7, 2018Updated 8 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 7 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 7 years ago
- NeoFlow: a proteogenomics pipeline for neoantigen discovery☆29Nov 16, 2024Updated last year
- Microassembly based somatic variant caller for NGS data☆153Jun 23, 2022Updated 4 years ago
- Python-based framework for computational immunomics☆40Jul 7, 2021Updated 5 years ago
- Alistair Miles' blog☆12Jan 10, 2025Updated last year
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆30May 8, 2018Updated 8 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆35Sep 25, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Immune deconvolution of publicly available TCGA expression data☆11Jan 28, 2019Updated 7 years ago
- ☆49Jul 7, 2022Updated 4 years ago
- Git-based antigen specificity database storage & management.☆157Updated this week
- ☆19Apr 20, 2025Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆59Updated this week
- CWL for GDC DNASeq workflows☆23Sep 27, 2026Updated last month
- Example project for integrating igv.js and flask☆26May 17, 2025Updated last year