Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence
☆26Sep 23, 2026Updated this week
Alternatives and similar repositories for isovar
Users that are interested in isovar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Library for manipulating genomic variants and predicting their effects☆87Updated this week
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated last month
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 7 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆67Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python package to annotate and visualize gene fusions.☆66Apr 14, 2026Updated 5 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 3 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated 2 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 3 months ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Jul 7, 2018Updated 8 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- NeoFlow: a proteogenomics pipeline for neoantigen discovery☆29Nov 16, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 7 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆30May 8, 2018Updated 8 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Aug 14, 2026Updated last month
- ☆11Jan 29, 2025Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools☆54Dec 19, 2019Updated 6 years ago
- Alistair Miles' blog☆12Jan 10, 2025Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆59Sep 9, 2026Updated 2 weeks ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Curated list of TCGA resources☆61Nov 10, 2017Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆79Jan 13, 2026Updated 8 months ago
- Example project for integrating igv.js and flask☆26May 17, 2025Updated last year
- CWL for GDC DNASeq workflows☆24Sep 10, 2026Updated 2 weeks ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 5 years ago
- A web tool that helps biomedical researchers understand how their work is being used by others, by analyzing the content in papers that c…☆13Oct 19, 2018Updated 7 years ago
- Analysis pipeline for cancer sequencing data☆112Apr 24, 2026Updated 5 months ago
- Variant to disease dataset workflows for Open Targets Genetics☆14May 11, 2026Updated 4 months ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆16Oct 10, 2019Updated 6 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 8 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 4 years ago
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 5 years ago