sigven / pharmOncoXLinks
Targeted and non-targeted anticancer drugs and drug regimens
☆28Updated 3 weeks ago
Alternatives and similar repositories for pharmOncoX
Users that are interested in pharmOncoX are comparing it to the libraries listed below
Sorting:
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Python function for TMB snake plots☆16Updated 4 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆12Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Filter and prioritize fusion calls☆20Updated 8 months ago
- ☆12Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 2 months ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month
- TFregulomeR reveals transcription factors’ context-specific features and functions☆16Updated 3 years ago
- ☆16Updated last week
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 8 months ago
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆12Updated last year
- Explore the cancer relevance of your gene list☆51Updated 3 months ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated last month
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 2 months ago
- Comprehensive Human Expressed SequenceS☆17Updated 10 months ago