heiniglab / DeepSomLinks
A CNN - based pipeline for calling somatic SNP and INDEL variants without a matched normal
☆11Updated 3 years ago
Alternatives and similar repositories for DeepSom
Users that are interested in DeepSom are comparing it to the libraries listed below
Sorting:
- ☆22Updated 10 months ago
- ☆23Updated 2 weeks ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆42Updated 3 months ago
- ☆13Updated 3 years ago
- FusionAnnotator source code☆15Updated 2 years ago
- ☆39Updated 5 months ago
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- ☆14Updated 6 months ago
- v2.x of the microassembly based somatic variant caller☆23Updated 5 months ago
- ☆23Updated 4 months ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Location of public benchmarking; primarily final results☆18Updated 10 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 9 months ago
- Filter and prioritize fusion calls☆20Updated last year
- analysis pipeline for CODEC data☆12Updated last month
- ☆11Updated 4 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- ☆24Updated last year
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 4 months ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 3 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Updated 8 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 9 months ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated 2 months ago