heiniglab / DeepSomLinks
A CNN - based pipeline for calling somatic SNP and INDEL variants without a matched normal
☆11Updated 3 years ago
Alternatives and similar repositories for DeepSom
Users that are interested in DeepSom are comparing it to the libraries listed below
Sorting:
- ☆23Updated 2 months ago
- ☆22Updated 9 months ago
- analysis pipeline for CODEC data☆12Updated 3 weeks ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 4 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 8 months ago
- Streamlined duo/trio analysis and pedigree haplotyping: from VCF to interactive HTML☆15Updated last year
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- ☆18Updated 5 years ago
- WGS Pipeline