A CNN - based pipeline for calling somatic SNP and INDEL variants without a matched normal
☆11Sep 7, 2022Updated 3 years ago
Alternatives and similar repositories for DeepSom
Users that are interested in DeepSom are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15May 27, 2025Updated last year
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 7 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 weeks ago
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 10 years ago
- ☆12Sep 22, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- Snakemake workflow for somatic mutation detection without matched normal samples☆14Mar 4, 2023Updated 3 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- Somatic point mutation caller☆34Jan 7, 2026Updated 7 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 3 years ago
- Streamlined duo/trio analysis and pedigree haplotyping: from VCF to interactive HTML☆15Oct 30, 2024Updated last year
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆13Jul 28, 2026Updated last week
- PhenoScore is an open source, artificial intelligence-based phenomics framework that combines facial recognition technology with Human Ph…☆23Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CNV detection tool for WES data☆13Aug 21, 2024Updated last year
- v2.x of the microassembly based somatic variant caller☆29Jun 30, 2026Updated last month
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Jul 31, 2026Updated last week
- ChatGPDB Service☆12Mar 30, 2023Updated 3 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆14May 16, 2026Updated 2 months ago
- ☆43Feb 9, 2024Updated 2 years ago
- NGS duplicate marking☆20Apr 6, 2021Updated 5 years ago
- ☆17Jul 19, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 7 years ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Building an automated Rubik's cube solver using cube abstraction☆13Mar 30, 2018Updated 8 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- PyIOmica (pyiomica) is a Python package for omics analyses.☆16Oct 6, 2025Updated 10 months ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- ☆13Sep 18, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆40Sep 14, 2016Updated 9 years ago
- A webcam-based 3*3*3 rubik's cube solver written in Python 3 and OpenCV.☆13Sep 30, 2022Updated 3 years ago
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- A program which generates a sequence of cube rotations learned from a deep neural network, solving a scrambled Rubik's Cube.☆11Aug 31, 2020Updated 5 years ago
- Enabling differential allele-specific analysis☆12Dec 28, 2024Updated last year
- Immuological gene typing and annotation for genome assembly☆41Mar 13, 2025Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago