Filter and prioritize fusion calls
☆20Feb 24, 2026Updated 2 months ago
Alternatives and similar repositories for annoFuse
Users that are interested in annoFuse are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- ☆11May 12, 2021Updated 4 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆12Apr 15, 2026Updated 3 weeks ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated 2 months ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 13, 2025Updated 10 months ago
- Targeted and non-targeted anticancer drugs and drug regimens☆30Mar 23, 2026Updated last month
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- TNER: Tri-Nucleotide Error Reducer for ctDNA detection☆21Aug 23, 2019Updated 6 years ago
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 10 years ago
- Various algorithms for analysing genomics data☆276Updated this week
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆23Apr 24, 2026Updated last week
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Jun 28, 2024Updated last year
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Oct 5, 2019Updated 6 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- v2.x of the microassembly based somatic variant caller☆27Updated this week
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year
- Clonal structure identification through penalizing pairwise differences☆11Nov 25, 2025Updated 5 months ago
- ☆22Feb 5, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Aug 22, 2022Updated 3 years ago
- RNA-seq analysis pipeline for detection of gene-fusions☆172Updated this week
- Somatic workflow for Kids-First☆15Apr 16, 2026Updated 2 weeks ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- R Shiny app for CRI iAtlas, an interactive web portal for exploring immuno-oncology data. (iAtlas portal 2022 and beyond)☆15Mar 10, 2026Updated last month
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago
- ClusterScan, search for clusters of features in a given annotation.☆11Aug 26, 2021Updated 4 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆13Jan 27, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago
- circos pipeline☆20May 8, 2021Updated 4 years ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆30May 19, 2017Updated 8 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 5 years ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago