d3b-center / annoFuseLinks
Filter and prioritize fusion calls
☆20Updated last year
Alternatives and similar repositories for annoFuse
Users that are interested in annoFuse are comparing it to the libraries listed below
Sorting:
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- DriverPower☆26Updated 8 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated this week
- ☆17Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆18Updated 4 years ago
- Python function for TMB snake plots☆16Updated 5 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 8 months ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- ☆22Updated 8 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Updated 3 years ago
- ☆23Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month
- Integrative analysis of structural variations.☆40Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Updated 8 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last week
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago