gimelbrantlab / Qllelic
Enabling differential allele-specific analysis
☆11Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for Qllelic
- Preprocessing sequencing data for allele-specific analysis☆11Updated 3 years ago
- ☆21Updated 3 weeks ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆22Updated 5 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated last year
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- ☆27Updated 3 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 weeks ago
- ☆15Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- ☆16Updated 4 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆27Updated 2 months ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- toolkit to process gtf files☆16Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 8 months ago
- ☆20Updated 11 months ago
- ☆24Updated last month
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 7 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- A method for measuring chromosome-specific telomere length from long reads☆20Updated 6 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 4 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 6 months ago
- ☆15Updated 7 months ago
- ☆14Updated last year
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆15Updated last month
- ☆18Updated last month
- ☆11Updated 2 years ago