Alternatives and similar repositories for genocat

Users that are interested in genocat are comparing it to the libraries listed below

• senzhaocode / FuSViz
  A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.
  ☆11Updated 2 months ago
• VCCRI / dv-trio
  dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…
  ☆11Updated 4 years ago
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• noefp / easy_gdb
  ☆12Updated last month
• raulossio / VCF-plotein
  Visualisation and prioritisation of genomic variants from human exome sequencing projects
  ☆13Updated 6 years ago
• qm2 / gpress
  This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.
  ☆12Updated last year
• jrderuiter / geneviz
  Library for visualising genomic features in Python.
  ☆15Updated 8 years ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆14Updated last month
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 10 years ago
• higlass / higlass-pileup
  ☆10Updated 4 months ago
• jslfree080 / bamscope
  A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)
  ☆10Updated last year
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆12Updated last month
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated 2 weeks ago
• quinlan-lab / bedqc
  BED QC tool (in the making)
  ☆16Updated 2 years ago
• gui11aume / mmp
  MEM mapper prototype
  ☆13Updated 4 years ago
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated 3 weeks ago
• NCBI-Codeathons / SWIGG
  A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
  ☆22Updated 5 years ago
• gregorykucherov / mreps
  mreps: software for tandem repeat identification in DNA
  ☆14Updated 5 years ago
• ihh / abrowse
  Multiple sequence alignment browser
  ☆11Updated 2 years ago
• mccoy-lab / hgv_modules
  Teaching modules for Human Genome Variation Lab.
  ☆20Updated last month
• KCCG / seave
  Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …
  ☆16Updated 6 years ago
• lucasnell / jackalope
  A swift, versatile phylogenomic and high-throughput sequencing simulator
  ☆8Updated last year
• gengit / FRAMA
  FRAMA: From RNA-seq data to annotated mRNA assemblies
  ☆12Updated 6 years ago
• bio-ontology-research-group / DeepSVP
  Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity
  ☆16Updated 3 years ago
• lamortenera / bamsignals
  R package to quickly obtain count vectors from indexed bam files
  ☆15Updated last month
• dnanexus / IndexTools
  IndexTools is a toolkit for extremely fast NGS analysis based on index files.
  ☆17Updated 2 years ago
• databio / bedshift
  Bedfile perturbation tool
  ☆17Updated last year
• sentisci / fheatmap
  R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…
  ☆11Updated 9 years ago
• roryk / bcbio.rnaseq
  Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …
  ☆24Updated 7 years ago
• mchaisso / mcutils
  ☆12Updated 3 months ago