Genomic Visualization Catalog
☆13Oct 6, 2022Updated 3 years ago
Alternatives and similar repositories for genocat
Users that are interested in genocat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Jan 23, 2020Updated 6 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Reference-agnostic Representation and Visualization of Pan-genomes☆19Sep 16, 2021Updated 5 years ago
- Multi-omics module that includes RNAseq, Epigenetics, and integrated multi-omics analyses developed as part of the NIGMS Sandbox project☆15Jun 6, 2025Updated last year
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- ☆12May 24, 2022Updated 4 years ago
- Plot CNV data with a genome viewer in R☆16Apr 5, 2017Updated 9 years ago
- Jupyter Notebooks and other code for 4CE data visualizations.☆14Jan 25, 2023Updated 3 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆15May 16, 2026Updated 4 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- High performance WebGL genome visualization☆16Oct 22, 2021Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 3 months ago
- defusion☆14Aug 24, 2021Updated 5 years ago
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated last month
- Pan gGnome Viewer☆10Sep 16, 2026Updated last week
- VCF (variant call format) parser☆26Sep 17, 2026Updated last week
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆16Mar 14, 2024Updated 2 years ago
- Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi☆11Sep 17, 2026Updated last week
- Bringing core concepts from anywidget to R☆22Aug 10, 2025Updated last year
- Just Annotate My Genome☆19May 21, 2026Updated 4 months ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots☆31Dec 1, 2021Updated 4 years ago
- ☆13Apr 16, 2026Updated 5 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- Structural variant VCF annotation, filtering, duplicate removal and comparison☆38Sep 3, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- 📊 x 📊 =❓An online gallery to explore the design space of comparative layouts☆18Nov 4, 2020Updated 5 years ago
- Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡☆17Apr 7, 2025Updated last year
- Agglomerative hierarchical clustering in JavaScript☆19Dec 17, 2024Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆16Apr 4, 2022Updated 4 years ago
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Nov 10, 2023Updated 2 years ago
- ☆17May 23, 2026Updated 4 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆25Aug 3, 2023Updated 3 years ago