annaquaglieri16 / varikondoLinks
R package to organise and standardise your genomic variant calls obtained with different callers.
☆11Updated 5 years ago
Alternatives and similar repositories for varikondo
Users that are interested in varikondo are comparing it to the libraries listed below
Sorting:
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Filter and prioritize fusion calls☆20Updated 8 months ago
- A tidy interface for coverage analysis☆24Updated 5 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 5 months ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last week
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆16Updated 4 months ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- ☆12Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆34Updated 2 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Updated 6 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- DriverPower☆26Updated 4 months ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated last month
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated 2 months ago
- interactive plots for differential expression analysis☆32Updated 2 months ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 8 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 3 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago