Alternatives and similar repositories for issues

Users that are interested in issues are comparing it to the libraries listed below

• AbbVie-ComputationalGenomics / genetic-evidence-approval
  ☆26Updated 4 years ago
• ericminikel / genetic_support
  Refining the impact of genetic evidence on clinical success
  ☆27Updated last year
• opentargets / genetics-finemapping
  Fine-mapping pipeline for Open Targets Genetics
  ☆27Updated 3 years ago
• 7ravis / hgvs-regexp
  WIP : regular expressions for identifying and extracting values from HGVS nomenclature
  ☆14Updated 7 years ago
• andrewGhazi / malacoda
  Bayesian analysis of MPRA and other high-throughput genomic assays
  ☆10Updated 5 years ago
• gagneurlab / RNAseq-ASHG
  RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
  ☆17Updated 3 years ago
• hammerlab / cohorts
  Utilities for analyzing mutations and neoepitopes in patient cohorts
  ☆20Updated 7 years ago
• andrej-fischer / EMu
  An Expectation-Maximization algorithm to infer mutational signatures
  ☆25Updated 9 years ago
• jamesware / alleleFrequencyApp
  Allele frequency filter app
  ☆14Updated 3 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 6 years ago
• AlexsLemonade / scpca-nf
  scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
  ☆13Updated last week
• elyadlezmi / RNA2CM
  Pipeline for the identification of cancer-related mutations from RNA-seq data
  ☆14Updated 4 years ago
• PreMedKB / PAnno
  PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.
  ☆15Updated 2 years ago
• seandavi / ci4cc-informatics-resources
  Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…
  ☆22Updated 7 years ago
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• sigven / pharmOncoX
  Targeted and non-targeted anticancer drugs and drug regimens
  ☆29Updated last week
• friend1ws / pmsignature
  R package for extracting mutation signatures from a list of somatic mutations
  ☆37Updated 6 years ago
• markrobinsonuzh / CrispRVariants
  ☆26Updated 5 years ago
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated 4 months ago
• databio / COCOA
  Annotating epigenetic variation among samples with region sets in R
  ☆11Updated 10 months ago
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆16Updated 2 months ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated 3 weeks ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated 2 years ago
• opentargets / gentropy
  Open Targets python framework for post-GWAS analysis
  ☆49Updated last week
• bartongroup / AlmostSignificant
  A server for maintaining high-throughput sequencing QC data
  ☆13Updated 4 months ago
• koesterlab / microphaser
  ☆11Updated 2 years ago
• gersteinlab / aloft
  ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…
  ☆19Updated 6 years ago
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆39Updated 2 years ago
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated 3 weeks ago
• Singh-Lab / Differential-Mutation-Analysis
  Differential Mutation Analysis
  ☆11Updated 5 years ago