aganezov / RCKLinks
RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
☆17Updated 5 years ago
Alternatives and similar repositories for RCK
Users that are interested in RCK are comparing it to the libraries listed below
Sorting:
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- ☆16Updated 5 months ago
- ☆14Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- ☆13Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- ☆12Updated 3 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- ☆9Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Location of public benchmarking; primarily final results☆18Updated 4 months ago
- Sample Contamination Estimate from VCF☆19Updated 7 months ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- ☆20Updated last year
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Benchmark structural variant calls against a reference set☆17Updated 8 months ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago