aganezov / RCKLinks
RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
☆18Updated 5 years ago
Alternatives and similar repositories for RCK
Users that are interested in RCK are comparing it to the libraries listed below
Sorting:
- ☆16Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Updated last month
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- ☆12Updated 4 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- ☆14Updated 2 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Updated 5 years ago
- ☆13Updated 3 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last month
- ☆20Updated 2 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 4 years ago
- A python wrapper around SURVIVOR☆20Updated last year
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 2 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- CLI to automate Nextflow pipeline testing☆12Updated last month
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Split a BAM file by haplotype support☆16Updated 8 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- ☆16Updated 4 years ago
- Benchmark structural variant calls against a reference set☆18Updated last week
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- ☆11Updated 2 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 6 months ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…