Pan gGnome Viewer
☆10Jul 10, 2025Updated last year
Alternatives and similar repositories for pgv
Users that are interested in pgv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆18May 10, 2026Updated 3 months ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15May 14, 2025Updated last year
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- Tools for finding mobile element insertions from single-end datasets☆24Dec 14, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated last month
- ☆22Apr 15, 2024Updated 2 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆16Mar 6, 2024Updated 2 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆29Jun 18, 2026Updated last month
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 3 years ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- General purpose utility related to GAF files☆33Aug 6, 2026Updated last week
- ☆11Apr 25, 2024Updated 2 years ago
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for M…☆11Updated this week
- Python function for TMB snake plots☆16Feb 12, 2026Updated 6 months ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- A set of tools to annotate VCF files with expression and readcount data☆31Aug 5, 2026Updated last week
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Jul 2, 2026Updated last month
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- extract SV signal from a BAM☆10Jul 26, 2018Updated 8 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- Pipeline for generating RNAseq-based cancer patient reports☆15Jul 31, 2026Updated last week
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Apr 13, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Cross-protein transfer learning for variant effect prediction☆21Sep 13, 2023Updated 2 years ago
- ☆164Apr 13, 2026Updated 4 months ago
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆18Feb 11, 2025Updated last year
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Calculate and plot distributions of genomic ranges☆27Apr 23, 2025Updated last year
- DNN-based small variant caller☆12May 2, 2022Updated 4 years ago
- ☆13Jan 23, 2020Updated 6 years ago