mskilab-org / pgvLinks
Pan gGnome Viewer
☆10Updated 2 months ago
Alternatives and similar repositories for pgv
Users that are interested in pgv are comparing it to the libraries listed below
Sorting:
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- Detects human contamination in bam files☆16Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- MEM mapper prototype☆13Updated 4 years ago
- ☆13Updated 8 years ago
- Recommended Graphtyper pipelines☆14Updated 4 years ago
- ☆12Updated this week
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆21Updated 6 years ago
- ☆16Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 3 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Updated 6 years ago
- ☆14Updated 2 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last week
- ☆12Updated 3 years ago
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 4 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 5 months ago
- Non-parametric structural variant genotyper☆15Updated 3 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10Updated 4 years ago
- ☆14Updated 5 years ago