Pan gGnome Viewer
☆10Jul 10, 2025Updated 7 months ago
Alternatives and similar repositories for pgv
Users that are interested in pgv are comparing it to the libraries listed below
Sorting:
- Tools for finding mobile element insertions from single-end datasets☆24Dec 14, 2019Updated 6 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Jan 7, 2025Updated last year
- Structural Variation breakpoint discovery via adaptive learning☆16Jul 6, 2023Updated 2 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Jan 31, 2024Updated 2 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated last year
- Irons out wrinkles in noisy coverage data using robust PCA☆15May 14, 2025Updated 9 months ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 6 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 5 years ago
- Rapid and accurate ancestry inference using SNVs.☆28Aug 15, 2025Updated 6 months ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Updated this week
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for M…☆11Updated this week
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 3 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 3 years ago
- WGS Pipeline☆13Jan 19, 2018Updated 8 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 5 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- ☆13May 2, 2018Updated 7 years ago
- SEEKIN: SEquence-based Estimation of KINship☆14Oct 11, 2017Updated 8 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 11 months ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- C implementation of the Louvain method for community detection in graphs☆11Mar 10, 2020Updated 5 years ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated last month
- Calculate and plot distributions of genomic ranges☆27Apr 23, 2025Updated 10 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Jan 9, 2026Updated last month
- ☆11Apr 25, 2024Updated last year
- High Performance Sorting Based Distributed memory K-mer counter☆15Dec 8, 2025Updated 2 months ago