mskilab-org / pgvLinks
Pan gGnome Viewer
☆10Updated last year
Alternatives and similar repositories for pgv
Users that are interested in pgv are comparing it to the libraries listed below
Sorting:
- Detects human contamination in bam files☆16Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- ☆12Updated 3 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago
- ☆11Updated 2 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Recommended Graphtyper pipelines☆14Updated 4 years ago
- ☆9Updated 3 years ago
- CLI to automate Nextflow pipeline testing☆12Updated 2 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- ☆12Updated last month
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- ☆16Updated 4 months ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Benchmark structural variant calls against a reference set☆17Updated 7 months ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Unfazed by genomic variant phasing☆26Updated last year
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 3 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- ☆16Updated last week
- Benchmarking variant calling in polyploids☆14Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago