TimD1 / nPoReLinks
nPoRe: n-Polymer Realigner for improved pileup-based variant calling
☆18Updated 3 years ago
Alternatives and similar repositories for nPoRe
Users that are interested in nPoRe are comparing it to the libraries listed below
Sorting:
- Tumour-only somatic mutation calling using long reads☆27Updated 9 months ago
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- Tandem repeat genotyping from long reads☆16Updated 3 months ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- ☆14Updated last year
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 6 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- ☆31Updated 2 years ago
- GBWT-based handle graph☆31Updated 3 weeks ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆27Updated 3 months ago
- Structural variant (SV) analysis tools☆36Updated last year
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago
- ☆23Updated 2 months ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆27Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 9 months ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- ☆13Updated 3 years ago
- PGR-TK: Pangenome Research Tool Kit☆17Updated 4 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 weeks ago
- ☆16Updated 6 months ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Updated 11 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 4 months ago
- ☆12Updated 3 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 3 months ago