T/B cell receptor sequencing analysis notes
☆276Dec 1, 2024Updated last year
Alternatives and similar repositories for TCR-BCR-seq-analysis
Users that are interested in TCR-BCR-seq-analysis are comparing it to the libraries listed below
Sorting:
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆237Feb 12, 2026Updated 3 weeks ago
- A toolkit for single-cell immune profiling☆363Feb 28, 2026Updated last week
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆124Feb 27, 2026Updated last week
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆338Nov 18, 2025Updated 3 months ago
- TCR and BCR assembly from RNA-seq data☆339Updated this week
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆16Jun 28, 2025Updated 8 months ago
- scRNAseq analysis notes from Ming Tang☆786Dec 2, 2024Updated last year
- Clonotype Neighbor Graph Analysis☆95Feb 12, 2026Updated 3 weeks ago
- Interpretation of cell states using reference single-cell maps☆312Dec 19, 2025Updated 2 months ago
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆383Feb 26, 2026Updated last week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆421Sep 4, 2025Updated 6 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆289Feb 26, 2026Updated last week
- Using TCR and expression for sequence embedding☆62Jan 6, 2026Updated 2 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆106Dec 18, 2025Updated 2 months ago
- Easy single cell analysis platform for enrichment☆215Jan 4, 2026Updated 2 months ago
- CiteFuse:☆28Feb 7, 2023Updated 3 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆123Sep 16, 2025Updated 5 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆117Apr 26, 2025Updated 10 months ago
- R package for pathway analysis in scRNA-seq data☆77Aug 17, 2024Updated last year
- A scanpy extension to analyse single-cell TCR and BCR data.☆246Updated this week
- A package to help convert different single-cell data formats to each other☆458Feb 20, 2026Updated 2 weeks ago
- tools and notes for spatial omics☆346Feb 26, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆765Jan 6, 2024Updated 2 years ago
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 2 months ago
- ☆41Aug 18, 2020Updated 5 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Jun 24, 2021Updated 4 years ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆120Feb 23, 2026Updated last week
- scWGCNA☆63Nov 8, 2022Updated 3 years ago
- my notes for scATACseq analysis☆132Apr 24, 2024Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆233Aug 7, 2024Updated last year
- R package for detecting doublets in single-cell RNA sequencing data☆526Mar 21, 2025Updated 11 months ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,668Updated this week
- Signature Analysis and Visualization for Single-Cell RNA-seq☆175Jun 10, 2024Updated last year
- Inferring CNV from Single-Cell RNA-Seq☆653Nov 14, 2025Updated 3 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆303Mar 6, 2023Updated 3 years ago
- NicheNet: predict active ligand-target links between interacting cells☆620Nov 12, 2025Updated 3 months ago
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆13Jan 28, 2025Updated last year
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Feb 23, 2026Updated last week
- Quantifying metabolism activity at the single-cell resolution☆153Feb 18, 2026Updated 2 weeks ago