Alternatives and similar repositories for TCR-BCR-seq-analysis:

Users that are interested in TCR-BCR-seq-analysis are comparing it to the libraries listed below

• slowkow / awesome-vdj
  📚 Tools and databases for analyzing HLA and VDJ genes.
  ☆219Updated 4 months ago
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆302Updated this week
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆330Updated 3 weeks ago
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆281Updated 6 months ago
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆135Updated 2 years ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆198Updated 7 months ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆124Updated last year
• IanevskiAleksandr / sc-type
  ☆261Updated 5 months ago
• broadinstitute / CellBender
  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
  ☆323Updated 9 months ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆208Updated 2 weeks ago
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆279Updated 2 years ago
• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆317Updated last year
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆458Updated 4 months ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆194Updated 10 months ago
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆269Updated last week
• crazyhottommy / awesome_spatial_omics
  tools and notes for spatial omics
  ☆284Updated last month
• saeyslab / nichenetr
  NicheNet: predict active ligand-target links between interacting cells
  ☆534Updated 2 weeks ago
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆319Updated this week
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆418Updated last year
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆292Updated 4 years ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆249Updated last week
• hbctraining / Intro-to-DGE
  ☆192Updated last month
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆302Updated 2 years ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆299Updated 4 years ago
• kaizhang / SnapATAC2
  Single-cell epigenomics analysis tools
  ☆256Updated last week
• navinlabcode / copykat
  ☆230Updated 10 months ago
• Teichlab / celltypist
  A tool for semi-automatic cell type classification
  ☆357Updated last month
• hbctraining / Investigating-chromatin-biology-ChIPseq
  ☆89Updated this week
• morris-lab / CellOracle
  This is the alpha version of the CellOracle package
  ☆347Updated 3 months ago
• welch-lab / liger
  R package for integrating and analyzing multiple single-cell datasets
  ☆408Updated 3 months ago