R package for the analysis of single-cell immune repertoires
☆45Feb 7, 2025Updated last year
Alternatives and similar repositories for Platypus
Users that are interested in Platypus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 2 months ago
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆128Updated this week
- ☆18Jan 29, 2022Updated 4 years ago
- pygor3 repository☆10Nov 20, 2025Updated 9 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆65Updated this week
- ☆15Aug 21, 2025Updated last year
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated last year
- Clone of the Bioconductor repository for the DropletUtils package.☆67Jul 29, 2026Updated last month
- Using BCR and expression for sequence embedding☆27Jun 12, 2026Updated 2 months ago
- ☆28May 16, 2025Updated last year
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆70Nov 18, 2025Updated 9 months ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆54Jan 7, 2026Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Interpretation of cell states using reference single-cell maps☆324Dec 19, 2025Updated 8 months ago
- TCR and BCR assembly from RNA-seq data☆362Aug 27, 2026Updated last week
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Jun 30, 2026Updated 2 months ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆43Oct 15, 2025Updated 10 months ago
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆342Aug 18, 2026Updated 2 weeks ago
- ☆30Aug 21, 2024Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Oct 28, 2019Updated 6 years ago
- Automate IMGT V-QUEST usage on imgt.org☆17Jun 13, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SCISSORS builds upon the Louvain graph-based clustering in Seurat by optimizing parameter selection when reclustering cell groups, with a…☆15May 5, 2026Updated 4 months ago
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆23Sep 10, 2023Updated 2 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Jul 26, 2021Updated 5 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆446Aug 25, 2026Updated 2 weeks ago
- Code and data used in The Great Repertoire Project☆30Jun 14, 2021Updated 5 years ago
- A toolkit for single-cell immune profiling☆375Aug 14, 2026Updated 3 weeks ago
- CellRank: dynamics from multi-view single-cell data☆456Aug 31, 2026Updated last week
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Dec 21, 2021Updated 4 years ago
- Identification of viral RdRPs in single-cell RNA sequencing data☆14Mar 12, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated 11 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆127Oct 31, 2025Updated 10 months ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆32Jun 8, 2022Updated 4 years ago
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆17Updated this week
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆400Updated this week
- ☆13May 27, 2025Updated last year
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆14Aug 22, 2026Updated 2 weeks ago