alexyermanos / Platypus
R package for the analysis of single-cell immune repertoires
☆42Updated 3 months ago
Alternatives and similar repositories for Platypus
Users that are interested in Platypus are comparing it to the libraries listed below
Sorting:
- Using TCR and expression for sequence embedding☆54Updated 3 months ago
- ☆64Updated 10 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 3 years ago
- scWGCNA☆60Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆68Updated 11 months ago
- ☆27Updated 6 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆110Updated 3 weeks ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 8 months ago
- R package for Pathway RespOnsive GENe activity inference☆105Updated 2 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆57Updated 6 months ago
- ☆47Updated 4 months ago
- Bostongene cell deconvolution algorithm from RNAseq☆52Updated last year
- Unified access to several second-generation deconvolution methods☆71Updated last week
- ☆80Updated last year
- ☆54Updated last year
- ☆18Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆78Updated last year
- Gene group activity utility functions for Scanpy☆74Updated 4 months ago
- ☆60Updated 5 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last week
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated last month
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆45Updated 4 months ago
- ☆37Updated 3 years ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- ☆61Updated 4 years ago
- Identifying tumor cells at the single-cell level using machine learning☆48Updated 6 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year