alexyermanos / PlatypusLinks
R package for the analysis of single-cell immune repertoires
☆43Updated 11 months ago
Alternatives and similar repositories for Platypus
Users that are interested in Platypus are comparing it to the libraries listed below
Sorting:
- Using TCR and expression for sequence embedding☆62Updated last week
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Updated 3 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆26Updated 3 years ago
- Pan-Cancer Single Cell Classifier☆83Updated last year
- R package for Pathway RespOnsive GENe activity inference☆113Updated 2 years ago
- Code related to the Celligner manuscript☆46Updated 5 years ago
- ☆57Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆138Updated 5 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated 2 weeks ago
- Unified access to several second-generation deconvolution methods☆88Updated 2 weeks ago
- ☆89Updated 4 months ago
- ☆81Updated last year
- Gene group activity utility functions for Scanpy☆99Updated last year
- scWGCNA☆61Updated 3 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆60Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆95Updated 7 months ago
- Immunology-related bioinformatics data and tools☆76Updated last year
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 4 years ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆92Updated last month
- R package to access DoRothEA's regulons☆154Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆83Updated 2 years ago
- ☆27Updated last year
- ☆63Updated 5 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 4 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆104Updated last month
- Mapping the Functional Landscape of TCR Repertoire☆35Updated 4 years ago
- ☆62Updated 5 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆44Updated last month