alexyermanos / Platypus
R package for the analysis of single-cell immune repertoires
☆42Updated 2 months ago
Alternatives and similar repositories for Platypus:
Users that are interested in Platypus are comparing it to the libraries listed below
- ☆62Updated 9 months ago
- Using TCR and expression for sequence embedding☆53Updated 2 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 3 years ago
- R package for Pathway RespOnsive GENe activity inference☆104Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 7 months ago
- ☆79Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆55Updated 5 months ago
- scWGCNA☆59Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 7 months ago
- Gene group activity utility functions for Scanpy☆74Updated 4 months ago
- ☆27Updated 6 months ago
- Unified access to several second-generation deconvolution methods☆71Updated 2 weeks ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆109Updated this week
- Pan-Cancer Single Cell Classifier☆68Updated 10 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆75Updated last year
- Code related to the Celligner manuscript☆46Updated 4 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated 2 weeks ago
- Functional Inference of Gene Regulation☆43Updated 9 months ago
- Bostongene cell deconvolution algorithm from RNAseq☆52Updated last year
- ☆60Updated 5 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- ☆54Updated last year
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- Inference of TCR motifs☆30Updated last month
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 6 months ago
- ☆47Updated 3 months ago
- ☆18Updated 3 years ago