scXpand: detection of T-cell clonal expansion from single-cell RNA sequencing
☆19Aug 11, 2026Updated 2 months ago
Alternatives and similar repositories for scXpand
Users that are interested in scXpand are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- ☆13May 11, 2024Updated 2 years ago
- ☆15Jul 16, 2026Updated 3 months ago
- ☆14Aug 18, 2026Updated 2 months ago
- For code related to T cell repertoire analysis☆13Aug 27, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An interpretable and flexible deep learning framework for single-T cell transcriptome and receptor analysis☆19Jun 9, 2026Updated 4 months ago
- This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…☆12Feb 7, 2023Updated 3 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆129Updated this week
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆24Sep 25, 2026Updated last month
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 4 years ago
- Using BCR and expression for sequence embedding☆28Jun 12, 2026Updated 4 months ago
- Cell identification in high-resolution Spatial Transcriptomics☆17Oct 12, 2026Updated 2 weeks ago
- ☆49Oct 29, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Aligning gene expression trajectories of single-cell reference and query systems☆94Oct 11, 2026Updated 2 weeks ago
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 5 years ago
- An R package to analyze single-cell V(D)J data☆30Nov 13, 2023Updated 2 years ago
- Using TCR and expression for sequence embedding☆64Jan 6, 2026Updated 9 months ago
- Pathway-Level Single-Cell Functional Profiling of Individual Patient Samples☆11Aug 6, 2025Updated last year
- Map large-scale single cells to the exact spatial locations☆21Jun 9, 2026Updated 4 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆110Apr 16, 2026Updated 6 months ago
- scTM: A package for topic modelling in transcriptomics data☆28May 1, 2024Updated 2 years ago
- ☆10Jan 24, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Dec 3, 2025Updated 10 months ago
- R Shiny tool to interactively visualize and analyze antibody repertoires☆11Jan 8, 2024Updated 2 years ago
- ☆11Jul 9, 2024Updated 2 years ago
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆26Jul 30, 2026Updated 2 months ago
- A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment☆24Updated this week
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 4 years ago
- ☆33May 4, 2025Updated last year
- flexible CDR based distance metrics☆76Dec 16, 2025Updated 10 months ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆116Sep 17, 2026Updated last month
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆13Sep 14, 2026Updated last month
- ☆10Jul 14, 2025Updated last year
- Methods to discover gene programs on single-cell data☆212Oct 12, 2026Updated 2 weeks ago
- My extensions for Seurat package☆10Jun 26, 2020Updated 6 years ago
- ☆30Aug 21, 2024Updated 2 years ago
- AnnData for the browser☆14Updated this week