🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design
☆338Nov 18, 2025Updated 6 months ago
Alternatives and similar repositories for immunarch
Users that are interested in immunarch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit for single-cell immune profiling☆369May 12, 2026Updated 3 weeks ago
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆393Updated this week
- TCR and BCR assembly from RNA-seq data☆353Updated this week
- Interpretation of cell states using reference single-cell maps☆321Dec 19, 2025Updated 5 months ago
- [Deprecated, see README] Post-analysis of immune repertoire sequencing data☆144Mar 26, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆17Jun 28, 2025Updated 11 months ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆241Feb 12, 2026Updated 3 months ago
- T/B cell receptor sequencing analysis notes☆277Dec 1, 2024Updated last year
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆541Jun 1, 2026Updated last week
- A scanpy extension to analyse single-cell TCR and BCR data.☆256Updated this week
- 🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq…☆46May 21, 2020Updated 6 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 8 months ago
- 🗂️ Git-based TCR database storage & management. Submissions welcome!☆155Jun 3, 2026Updated last week
- Clonotype Neighbor Graph Analysis☆98Apr 29, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- R package implementation of Milo for testing for differential abundance in KNN graphs☆434May 11, 2026Updated last month
- TRAjectory-based Differential Expression analysis for SEQuencing data☆297Jun 17, 2025Updated 11 months ago
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.☆40Jun 8, 2020Updated 6 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆127Jun 4, 2026Updated last week
- Interactively analyze single cell genomic data☆188Jan 14, 2026Updated 4 months ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Nov 10, 2025Updated 7 months ago
- Clone of the Bioconductor repository for the SingleR package.☆202May 21, 2026Updated 3 weeks ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆241May 8, 2023Updated 3 years ago
- R package to infer biological activities from omics data using a collection of methods.☆297Dec 16, 2025Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- ☆41Aug 18, 2020Updated 5 years ago
- Using TCR and expression for sequence embedding☆63Jan 6, 2026Updated 5 months ago
- Inferring CNV from Single-Cell RNA-Seq☆674Nov 14, 2025Updated 6 months ago
- Easy single cell analysis platform for enrichment☆225Apr 3, 2026Updated 2 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆232Jun 4, 2026Updated last week
- ☆38Nov 27, 2023Updated 2 years ago
- [Deprectated, use vdjmatch2 instead] ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Feb 23, 2026Updated 3 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆225Apr 26, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Multi-subject Single Cell Deconvolution☆300Mar 4, 2024Updated 2 years ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆430Feb 4, 2026Updated 4 months ago
- A Bayesian model for compositional single-cell data analysis☆198Jan 13, 2026Updated 4 months ago
- flexible CDR based distance metrics☆72Dec 16, 2025Updated 5 months ago
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆221Feb 4, 2026Updated 4 months ago
- Gene set variation analysis☆244May 25, 2026Updated 2 weeks ago