immunomind / immunarchLinks
𧬠immunarch [R package] β Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
β322Updated last year
Alternatives and similar repositories for immunarch
Users that are interested in immunarch are comparing it to the libraries listed below
Sorting:
- A toolkit for single-cell immune profilingβ337Updated this week
- R package implementation of Milo for testing for differential abundance in KNN graphsβ382Updated 3 weeks ago
- β268Updated 7 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)β288Updated last week
- Interpretation of cell states using reference single-cell mapsβ278Updated last month
- R package for integrating and analyzing multiple single-cell datasetsβ416Updated last month
- Table of software for the analysis of single-cell RNA-seq data.β326Updated this week
- T/B cell receptor sequencing analysis notesβ256Updated 6 months ago
- High dimensional weighted gene co-expression network analysisβ414Updated 3 weeks ago
- Clone of the Bioconductor repository for the SingleR package.β191Updated 3 weeks ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)β423Updated 4 months ago
- NicheNet: predict active ligand-target links between interacting cellsβ548Updated 3 weeks ago
- π Tools and databases for analyzing HLA and VDJ genes.β225Updated 2 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq dataβ279Updated 2 years ago
- Analysis Pipeline for Single Cell ATAC-seqβ318Updated 2 years ago
- Community-provided extensions to Seuratβ334Updated 7 months ago
- Single-cell Transcriptome and Regulome Analysis Pipelineβ285Updated 2 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.β333Updated 11 months ago
- R package for detecting doublets in single-cell RNA sequencing dataβ477Updated 3 months ago
- TCR and BCR assembly from RNA-seq dataβ312Updated this week
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methodβ¦β495Updated last month
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.β362Updated this week
- β239Updated last year
- my notes for scATACseq analysisβ128Updated last year
- Fast Gene Set Enrichment Analysisβ405Updated this week
- R package for modeling single cell UMI expression data using regularized negative binomial regressionβ225Updated last month
- A package to help convert different single-cell data formats to each otherβ428Updated last year
- Analysis of single cell RNA-seq data courseβ138Updated 2 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing dataβ265Updated last week
- β199Updated 3 months ago