𧬠immunarch [R package] β Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design
β339Nov 18, 2025Updated 8 months ago
Alternatives and similar repositories for immunarch
Users that are interested in immunarch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit for single-cell immune profilingβ372Jul 9, 2026Updated last week
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.β396Jul 10, 2026Updated last week
- TCR and BCR assembly from RNA-seq dataβ357Updated this week
- Interpretation of cell states using reference single-cell mapsβ323Dec 19, 2025Updated 7 months ago
- π Tools and databases for analyzing HLA and VDJ genes.β242Feb 12, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)β17Jun 28, 2025Updated last year
- T/B cell receptor sequencing analysis notesβ279Dec 1, 2024Updated last year
- Analysis of immune repertoire sequencing resultsβ144Updated this week
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methodβ¦β547Jul 6, 2026Updated 2 weeks ago
- A scanpy extension to analyse single-cell TCR and BCR data.β263Updated this week
- Git-based antigen specificity database storage & management.β155Jun 11, 2026Updated last month
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Dataβ122Sep 16, 2025Updated 10 months ago
- Clonotype Neighbor Graph Analysisβ100Jun 15, 2026Updated last month
- TRAjectory-based Differential Expression analysis for SEQuencing dataβ306Jun 17, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package implementation of Milo for testing for differential abundance in KNN graphsβ440May 11, 2026Updated 2 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis packageβ127Updated this week
- π¦ Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeqβ¦β46May 21, 2020Updated 6 years ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. β¦β126Nov 10, 2025Updated 8 months ago
- Interactively analyze single cell genomic dataβ188Jan 14, 2026Updated 6 months ago
- Clone of the Bioconductor repository for the SingleR package.β204Jul 7, 2026Updated 2 weeks ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Dataβ243May 8, 2023Updated 3 years ago
- R package to infer biological activities from omics data using a collection of methods.β301Dec 16, 2025Updated 7 months ago
- β41Aug 18, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.β40Jun 8, 2020Updated 6 years ago
- Mapping the Functional Landscape of TCR Repertoireβ36Oct 8, 2021Updated 4 years ago
- β38Nov 27, 2023Updated 2 years ago
- Inferring CNV from Single-Cell RNA-Seqβ677Nov 14, 2025Updated 8 months ago
- Using TCR and expression for sequence embeddingβ63Jan 6, 2026Updated 6 months ago
- Easy single cell analysis platform for enrichmentβ228Apr 3, 2026Updated 3 months ago
- Matching T-cell receptor repertoires to a database of antigen specificitiesβ39Jul 14, 2026Updated last week
- Multi-sample multi-group scRNA-seq analysis toolsβ237Jul 6, 2026Updated 2 weeks ago
- R package for the joint analysis of multiple single-cell RNA-seq datasetsβ229Jul 2, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Multi-subject Single Cell Deconvolutionβ303Mar 4, 2024Updated 2 years ago
- R package for integrating and analyzing multiple single-cell datasetsβ431Feb 4, 2026Updated 5 months ago
- Summary statistics for repertoiresβ17Feb 1, 2023Updated 3 years ago
- A Bayesian model for compositional single-cell data analysisβ199Jan 13, 2026Updated 6 months ago
- flexible CDR based distance metricsβ74Dec 16, 2025Updated 7 months ago
- Gene set variation analysisβ247Updated this week
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiomeβ223Feb 4, 2026Updated 5 months ago