𧬠immunarch [R package] β Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design
β338Nov 18, 2025Updated 4 months ago
Alternatives and similar repositories for immunarch
Users that are interested in immunarch are comparing it to the libraries listed below
Sorting:
- A toolkit for single-cell immune profilingβ366Mar 9, 2026Updated last week
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.β383Mar 12, 2026Updated last week
- TCR and BCR assembly from RNA-seq dataβ343Mar 14, 2026Updated last week
- Interpretation of cell states using reference single-cell mapsβ313Dec 19, 2025Updated 3 months ago
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing dataβ143May 23, 2024Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)β16Jun 28, 2025Updated 8 months ago
- π Tools and databases for analyzing HLA and VDJ genes.β238Feb 12, 2026Updated last month
- T/B cell receptor sequencing analysis notesβ276Dec 1, 2024Updated last year
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methodβ¦β529Jan 5, 2026Updated 2 months ago
- A scanpy extension to analyse single-cell TCR and BCR data.β246Updated this week
- π¦ Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeqβ¦β46May 21, 2020Updated 5 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Dataβ122Sep 16, 2025Updated 6 months ago
- ποΈ Git-based TCR database storage & management. Submissions welcome!β153Updated this week
- Clonotype Neighbor Graph Analysisβ95Feb 12, 2026Updated last month
- R package implementation of Milo for testing for differential abundance in KNN graphsβ423Sep 4, 2025Updated 6 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing dataβ291Jun 17, 2025Updated 9 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis packageβ124Updated this week
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.β40Jun 8, 2020Updated 5 years ago
- Interactively analyze single cell genomic dataβ186Jan 14, 2026Updated 2 months ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. β¦β128Nov 10, 2025Updated 4 months ago
- Clone of the Bioconductor repository for the SingleR package.β199Mar 9, 2026Updated last week
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Dataβ238May 8, 2023Updated 2 years ago
- R package to infer biological activities from omics data using a collection of methods.β286Dec 16, 2025Updated 3 months ago
- Mapping the Functional Landscape of TCR Repertoireβ36Oct 8, 2021Updated 4 years ago
- β41Aug 18, 2020Updated 5 years ago
- Using TCR and expression for sequence embeddingβ62Jan 6, 2026Updated 2 months ago
- Easy single cell analysis platform for enrichmentβ216Jan 4, 2026Updated 2 months ago
- Inferring CNV from Single-Cell RNA-Seqβ660Nov 14, 2025Updated 4 months ago
- Multi-sample multi-group scRNA-seq analysis toolsβ221Mar 8, 2026Updated 2 weeks ago
- β38Nov 27, 2023Updated 2 years ago
- βοΈ Matching T-cell repertoire against a database of TCR antigen specificitiesβ39Feb 23, 2026Updated 3 weeks ago
- R package for the joint analysis of multiple single-cell RNA-seq datasetsβ220Mar 9, 2026Updated last week
- Multi-subject Single Cell Deconvolutionβ288Mar 4, 2024Updated 2 years ago
- Summary statistics for repertoiresβ17Feb 1, 2023Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasetsβ427Feb 4, 2026Updated last month
- flexible CDR based distance metricsβ71Dec 16, 2025Updated 3 months ago
- A Bayesian model for compositional single-cell data analysisβ193Jan 13, 2026Updated 2 months ago
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiomeβ207Feb 4, 2026Updated last month
- Gene set variation analysisβ235Updated this week