𧬠immunarch [R package] β Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design
β341Aug 7, 2026Updated this week
Alternatives and similar repositories for immunarch
Users that are interested in immunarch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit for single-cell immune profilingβ374Jul 9, 2026Updated last month
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.β399Jul 10, 2026Updated last month
- TCR and BCR assembly from RNA-seq dataβ359Aug 3, 2026Updated last week
- Interpretation of cell states using reference single-cell mapsβ323Dec 19, 2025Updated 7 months ago
- π Tools and databases for analyzing HLA and VDJ genes.β243Feb 12, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)β17Jun 28, 2025Updated last year
- T/B cell receptor sequencing analysis notesβ280Dec 1, 2024Updated last year
- Analysis of immune repertoire sequencing resultsβ145Jul 30, 2026Updated last week
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methodβ¦β548Aug 3, 2026Updated last week
- A scanpy extension to analyse single-cell TCR and BCR data.β264Updated this week
- Git-based antigen specificity database storage & management.β155Jun 11, 2026Updated 2 months ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Dataβ121Sep 16, 2025Updated 10 months ago
- Clonotype Neighbor Graph Analysisβ100Jun 15, 2026Updated last month
- TRAjectory-based Differential Expression analysis for SEQuencing dataβ309Jun 17, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package implementation of Milo for testing for differential abundance in KNN graphsβ442May 11, 2026Updated 2 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis packageβ127Updated this week
- π¦ Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeqβ¦β46May 21, 2020Updated 6 years ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. β¦β126Nov 10, 2025Updated 9 months ago
- Interactively analyze single cell genomic dataβ189Jan 14, 2026Updated 6 months ago
- Clone of the Bioconductor repository for the SingleR package.β204Jul 7, 2026Updated last month
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Dataβ244May 8, 2023Updated 3 years ago
- R package to infer biological activities from omics data using a collection of methods.β303Dec 16, 2025Updated 7 months ago
- β41Aug 18, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Mapping the Functional Landscape of TCR Repertoireβ36Oct 8, 2021Updated 4 years ago
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.β40Jun 8, 2020Updated 6 years ago
- β38Nov 27, 2023Updated 2 years ago
- Inferring CNV from Single-Cell RNA-Seqβ680Nov 14, 2025Updated 8 months ago
- Using TCR and expression for sequence embeddingβ63Jan 6, 2026Updated 7 months ago
- Easy single cell analysis platform for enrichmentβ228Updated this week
- Matching T-cell receptor repertoires to a database of antigen specificitiesβ39Jul 30, 2026Updated last week
- Multi-sample multi-group scRNA-seq analysis toolsβ240Jul 6, 2026Updated last month
- R package for the joint analysis of multiple single-cell RNA-seq datasetsβ230Jul 2, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Multi-subject Single Cell Deconvolutionβ305Mar 4, 2024Updated 2 years ago
- R package for integrating and analyzing multiple single-cell datasetsβ432Feb 4, 2026Updated 6 months ago
- Summary statistics for repertoiresβ17Feb 1, 2023Updated 3 years ago
- A Bayesian model for compositional single-cell data analysisβ199Jan 13, 2026Updated 6 months ago
- flexible CDR based distance metricsβ75Dec 16, 2025Updated 7 months ago
- Gene set variation analysisβ247Aug 4, 2026Updated last week
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiomeβ225Feb 4, 2026Updated 6 months ago