immunomind / immunarchLinks
𧬠immunarch [R package] β Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
β324Updated last year
Alternatives and similar repositories for immunarch
Users that are interested in immunarch are comparing it to the libraries listed below
Sorting:
- A toolkit for single-cell immune profilingβ345Updated 2 weeks ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)β292Updated last month
- Table of software for the analysis of single-cell RNA-seq data.β330Updated this week
- Interpretation of cell states using reference single-cell mapsβ290Updated 3 weeks ago
- R package for integrating and analyzing multiple single-cell datasetsβ419Updated this week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)β431Updated 6 months ago
- Fast Gene Set Enrichment Analysisβ412Updated last month
- Clone of the Bioconductor repository for the SingleR package.β193Updated last month
- T/B cell receptor sequencing analysis notesβ263Updated 8 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)β302Updated 5 years ago
- NicheNet: predict active ligand-target links between interacting cellsβ559Updated last month
- β205Updated 2 weeks ago
- Community-provided extensions to Seuratβ342Updated 9 months ago
- High dimensional weighted gene co-expression network analysisβ431Updated last month
- Analysis Pipeline for Single Cell ATAC-seqβ318Updated 2 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methodβ¦β500Updated 3 weeks ago
- R package for modeling single cell UMI expression data using regularized negative binomial regressionβ232Updated 3 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq dataβ291Updated 2 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphsβ391Updated this week
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIsβ283Updated last year
- TCR and BCR assembly from RNA-seq dataβ323Updated 3 weeks ago
- R toolkit for the analysis of single-cell chromatin dataβ385Updated last week
- β275Updated 9 months ago
- Single-cell Transcriptome and Regulome Analysis Pipelineβ289Updated 2 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.β304Updated last year
- TRAjectory-based Differential Expression analysis for SEQuencing dataβ279Updated 2 months ago
- β357Updated 3 years ago
- ChIP peak Annotation, Comparison and Visualizationβ238Updated 4 months ago
- Visualization of Functional Enrichment Resultβ246Updated last month
- β401Updated last month