🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design
☆338Nov 18, 2025Updated 5 months ago
Alternatives and similar repositories for immunarch
Users that are interested in immunarch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit for single-cell immune profiling☆367Apr 24, 2026Updated last week
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆386Apr 22, 2026Updated last week
- TCR and BCR assembly from RNA-seq data☆346Apr 23, 2026Updated last week
- Interpretation of cell states using reference single-cell maps☆316Dec 19, 2025Updated 4 months ago
- [Deprecated, see README] Post-analysis of immune repertoire sequencing data☆144Mar 26, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆17Jun 28, 2025Updated 10 months ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆238Feb 12, 2026Updated 2 months ago
- T/B cell receptor sequencing analysis notes☆277Dec 1, 2024Updated last year
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆538Apr 6, 2026Updated 3 weeks ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆249Updated this week
- 🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq…☆46May 21, 2020Updated 5 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 7 months ago
- 🗂️ Git-based TCR database storage & management. Submissions welcome!☆153Updated this week
- Clonotype Neighbor Graph Analysis☆96Feb 12, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package implementation of Milo for testing for differential abundance in KNN graphs☆428Apr 23, 2026Updated last week
- TRAjectory-based Differential Expression analysis for SEQuencing data☆295Jun 17, 2025Updated 10 months ago
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.☆40Jun 8, 2020Updated 5 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆125Apr 14, 2026Updated 2 weeks ago
- Interactively analyze single cell genomic data☆186Jan 14, 2026Updated 3 months ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Nov 10, 2025Updated 5 months ago
- Clone of the Bioconductor repository for the SingleR package.☆202Apr 8, 2026Updated 3 weeks ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆240May 8, 2023Updated 2 years ago
- R package to infer biological activities from omics data using a collection of methods.☆292Dec 16, 2025Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- ☆41Aug 18, 2020Updated 5 years ago
- Using TCR and expression for sequence embedding☆63Jan 6, 2026Updated 3 months ago
- Inferring CNV from Single-Cell RNA-Seq☆663Nov 14, 2025Updated 5 months ago
- Easy single cell analysis platform for enrichment☆223Apr 3, 2026Updated 3 weeks ago
- Multi-sample multi-group scRNA-seq analysis tools☆227Updated this week
- ☆38Nov 27, 2023Updated 2 years ago
- [Deprectated, use vdjmatch2 instead] ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Feb 23, 2026Updated 2 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆224Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Multi-subject Single Cell Deconvolution☆296Mar 4, 2024Updated 2 years ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆428Feb 4, 2026Updated 2 months ago
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 4 months ago
- A Bayesian model for compositional single-cell data analysis☆196Jan 13, 2026Updated 3 months ago
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆214Feb 4, 2026Updated 2 months ago
- Gene set variation analysis☆240Updated this week