𧬠immunarch [R package] β Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design
β341Aug 18, 2026Updated last week
Alternatives and similar repositories for immunarch
Users that are interested in immunarch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit for single-cell immune profilingβ374Aug 14, 2026Updated 2 weeks ago
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.β399Jul 10, 2026Updated last month
- TCR and BCR assembly from RNA-seq dataβ362Updated this week
- Interpretation of cell states using reference single-cell mapsβ323Dec 19, 2025Updated 8 months ago
- π Tools and databases for analyzing HLA and VDJ genes.β242Feb 12, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)β18Jun 28, 2025Updated last year
- T/B cell receptor sequencing analysis notesβ281Dec 1, 2024Updated last year
- Analysis of immune repertoire sequencing resultsβ145Aug 20, 2026Updated last week
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methodβ¦β549Aug 3, 2026Updated 3 weeks ago
- A scanpy extension to analyse single-cell TCR and BCR data.β265Updated this week
- Git-based antigen specificity database storage & management.β155Updated this week
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Dataβ123Sep 16, 2025Updated 11 months ago
- Clonotype Neighbor Graph Analysisβ100Jun 15, 2026Updated 2 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing dataβ309Jun 17, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package implementation of Milo for testing for differential abundance in KNN graphsβ446Updated this week
- dandelion - A single cell BCR/TCR V(D)J-seq analysis packageβ128Aug 19, 2026Updated last week
- π¦ List of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencinβ¦β46May 21, 2020Updated 6 years ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. β¦β126Nov 10, 2025Updated 9 months ago
- Interactively analyze single cell genomic dataβ190Jan 14, 2026Updated 7 months ago
- Clone of the Bioconductor repository for the SingleR package.β204Updated this week
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Dataβ244May 8, 2023Updated 3 years ago
- R package to infer biological activities from omics data using a collection of methods.β304Dec 16, 2025Updated 8 months ago
- β41Aug 18, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.β40Jun 8, 2020Updated 6 years ago
- Mapping the Functional Landscape of TCR Repertoireβ36Oct 8, 2021Updated 4 years ago
- β38Nov 27, 2023Updated 2 years ago
- Inferring CNV from Single-Cell RNA-Seqβ681Nov 14, 2025Updated 9 months ago
- Using TCR and expression for sequence embeddingβ63Jan 6, 2026Updated 7 months ago
- Easy single cell analysis platform for enrichmentβ231Aug 9, 2026Updated 3 weeks ago
- Matching T-cell receptor repertoires to a database of antigen specificitiesβ39Aug 18, 2026Updated last week
- Multi-sample multi-group scRNA-seq analysis toolsβ240Jul 6, 2026Updated last month
- R package for the joint analysis of multiple single-cell RNA-seq datasetsβ230Jul 2, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Multi-subject Single Cell Deconvolutionβ307Mar 4, 2024Updated 2 years ago
- R package for integrating and analyzing multiple single-cell datasetsβ432Aug 18, 2026Updated last week
- Summary statistics for repertoiresβ17Feb 1, 2023Updated 3 years ago
- A Bayesian model for compositional single-cell data analysisβ200Jan 13, 2026Updated 7 months ago
- flexible CDR based distance metricsβ75Dec 16, 2025Updated 8 months ago
- Gene set variation analysisβ247Aug 4, 2026Updated 3 weeks ago
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiomeβ227Feb 4, 2026Updated 6 months ago