immunomind / immunarchLinks
𧬠immunarch [R package] β Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design
β330Updated 2 weeks ago
Alternatives and similar repositories for immunarch
Users that are interested in immunarch are comparing it to the libraries listed below
Sorting:
- A toolkit for single-cell immune profilingβ353Updated 2 weeks ago
- Table of software for the analysis of single-cell RNA-seq data.β331Updated this week
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)β297Updated 2 weeks ago
- R package for integrating and analyzing multiple single-cell datasetsβ422Updated 2 months ago
- Fast Gene Set Enrichment Analysisβ419Updated 3 weeks ago
- T/B cell receptor sequencing analysis notesβ266Updated 10 months ago
- Community-provided extensions to Seuratβ348Updated 11 months ago
- Clone of the Bioconductor repository for the SingleR package.β196Updated last week
- R package implementation of Milo for testing for differential abundance in KNN graphsβ399Updated last month
- Single-cell Transcriptome and Regulome Analysis Pipelineβ293Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)β307Updated 5 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)β436Updated 8 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq dataβ296Updated 3 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIsβ286Updated last year
- Interpretation of cell states using reference single-cell mapsβ295Updated 2 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regressionβ241Updated 6 months ago
- β209Updated 2 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.β310Updated last year
- Analysis Pipeline for Single Cell ATAC-seqβ320Updated 2 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing dataβ284Updated 4 months ago
- Multi-subject Single Cell Deconvolutionβ275Updated last year
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methodβ¦β508Updated 3 weeks ago
- High dimensional weighted gene co-expression network analysisβ441Updated last week
- TCR and BCR assembly from RNA-seq dataβ327Updated 3 weeks ago
- β275Updated 11 months ago
- β290Updated 3 years ago
- Tools and methods for analysis of single cell assay data in Rβ256Updated 2 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.β361Updated 3 months ago
- Single cell RNA sequencing analysis courseβ224Updated last month
- R toolkit for the analysis of single-cell chromatin dataβ393Updated 3 weeks ago