immunomind / immunarch
🧬 immunarch [R package] – Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
☆318Updated last year
Alternatives and similar repositories for immunarch:
Users that are interested in immunarch are comparing it to the libraries listed below
- A toolkit for single-cell immune profiling☆329Updated 3 weeks ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆364Updated 5 months ago
- Interpretation of cell states using reference single-cell maps☆269Updated last week
- NicheNet: predict active ligand-target links between interacting cells☆532Updated last week
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆280Updated 6 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆413Updated 2 months ago
- Clone of the Bioconductor repository for the SingleR package.☆185Updated 2 months ago
- T/B cell receptor sequencing analysis notes☆247Updated 4 months ago
- High dimensional weighted gene co-expression network analysis☆396Updated 3 weeks ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆292Updated 4 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆319Updated this week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆268Updated 2 years ago
- ☆353Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆407Updated 3 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆279Updated 2 years ago
- Community-provided extensions to Seurat☆329Updated 4 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆320Updated 9 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆317Updated last year
- ☆260Updated 5 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆221Updated 4 months ago
- Fast Gene Set Enrichment Analysis☆396Updated last month
- Fast, sensitive and accurate integration of single-cell data with Harmony☆563Updated 5 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆249Updated this week
- ☆230Updated 9 months ago
- Dataset distribution for Seurat☆136Updated last month
- ☆192Updated last month
- R package for detecting doublets in single-cell RNA sequencing data☆457Updated last month
- Inferring CNV from Single-Cell RNA-Seq☆605Updated 2 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆279Updated 9 months ago
- TCR and BCR assembly from RNA-seq data☆302Updated last month