BorchLab / IbexLinks
Using BCR and expression for sequence embedding
☆25Updated 2 weeks ago
Alternatives and similar repositories for Ibex
Users that are interested in Ibex are comparing it to the libraries listed below
Sorting:
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- ☆44Updated last year
- Using TCR and expression for sequence embedding☆60Updated 4 months ago
- ☆37Updated 9 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆92Updated 7 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 3 months ago
- pseudobulking on an AnnData object☆34Updated 9 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- ☆26Updated 7 months ago
- ☆29Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last month
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 4 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆88Updated last week
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Inference of TCR motifs☆32Updated 6 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆26Updated last year
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 weeks ago
- Fast motif matching in R☆46Updated last year
- Single cell omics biology annotations☆51Updated 8 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 5 months ago
- ☆35Updated 9 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 2 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated last month
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆30Updated last year
- CAusal Reasoning for Network Identification with integer VALue programming in R☆61Updated 2 years ago