BorchLab / Ibex
Using BCR and expression for sequence embedding
☆21Updated 2 weeks ago
Alternatives and similar repositories for Ibex:
Users that are interested in Ibex are comparing it to the libraries listed below
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆41Updated last year
- ☆22Updated 5 months ago
- Explore the cancer relevance of your gene list☆51Updated last month
- Gene regulatory network containing signed transcription factor-target gene interactions☆74Updated last year
- ☆42Updated 5 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- ☆12Updated 11 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- ☆35Updated last month
- ☆29Updated 2 years ago
- Inference of TCR motifs☆30Updated last month
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- RNA velocity validation☆22Updated 3 years ago
- ☆30Updated 3 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated 2 weeks ago
- ☆40Updated 4 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated 2 months ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated last month
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated 10 months ago
- Standalone shiny server container for viewing CellChat object☆12Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 10 months ago
- ☆37Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last month
- Information-based dimensionality reduction☆29Updated 4 months ago