BorchLab / IbexLinks
Using BCR and expression for sequence embedding
☆25Updated this week
Alternatives and similar repositories for Ibex
Users that are interested in Ibex are comparing it to the libraries listed below
Sorting:
- ☆44Updated 9 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- Signac☆25Updated 2 years ago
- Using TCR and expression for sequence embedding☆58Updated last week
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 3 months ago
- ☆35Updated 5 months ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- ☆44Updated 2 weeks ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated 3 weeks ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- ☆61Updated 4 years ago
- ☆24Updated 3 months ago
- Inference of TCR motifs☆32Updated 2 months ago
- Benchmark of GRNs using the GRETA pipeline☆27Updated last week
- ACTIONet single-cell analysis framework☆42Updated 11 months ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated this week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- Information-based dimensionality reduction☆29Updated 8 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated last year
- Unified access to several second-generation deconvolution methods☆73Updated 3 weeks ago
- A unified interface to spatial transcriptomics deconvolution tools☆43Updated 3 weeks ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- ☆29Updated 2 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago