tskit-dev / pyslimLinks
Tools for dealing with tree sequences coming to and from SLiM.
☆27Updated 2 weeks ago
Alternatives and similar repositories for pyslim
Users that are interested in pyslim are comparing it to the libraries listed below
Sorting:
- Infer a tree sequence from genetic variation data.☆59Updated 2 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 weeks ago
- Drawing functions for Demes demographic models☆20Updated 10 months ago
- ☆57Updated 2 years ago
- Sampling and inference of genealogies with recombination☆29Updated 8 months ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- A set of tutorials for msprime and tskit.☆20Updated 3 weeks ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- ☆29Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆54Updated 9 years ago
- Infer demographic history with the Moran model☆47Updated 3 months ago
- machine learning applications for dadi☆15Updated 4 months ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated last year
- ☆20Updated 8 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated last month
- Haplotype and population structure inference using neural networks.☆27Updated 6 months ago
- Software for detecting introgression using supervised machine learning☆21Updated 2 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 8 months ago
- GONE: Scripts, programs and an example data set☆47Updated last year
- GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples …☆26Updated last week
- ☆20Updated 4 years ago
- Two locus likelihoods and ARGs under changing population size☆14Updated 2 months ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆51Updated 2 months ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- ☆24Updated 7 years ago
- k-mer learning materials☆70Updated 3 months ago
- Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments☆42Updated 4 months ago