Tools for dealing with tree sequences coming to and from SLiM.
☆28Jun 30, 2026Updated last month
Alternatives and similar repositories for pyslim
Users that are interested in pyslim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆45Oct 30, 2025Updated 9 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- Infer a tree sequence from genetic variation data.☆65Jun 30, 2026Updated last month
- Haplotype and population structure inference using neural networks.☆30Dec 5, 2024Updated last year
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- deep learning prediction of geographic location from individual genome sequences☆54Jan 20, 2025Updated last year
- Simulate ARGs and genomic sequence data using population genetic models☆217Jun 30, 2026Updated last month
- A set of tutorials for msprime and tskit.☆21Jun 19, 2026Updated last month
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆27Jul 8, 2022Updated 4 years ago
- machine learning applications for dadi☆17Jan 23, 2025Updated last year
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 8 years ago
- Population-scale Ancestral Recombination Graph (ARG) library☆189Jul 6, 2026Updated last month
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Feb 17, 2026Updated 5 months ago
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆225Jul 30, 2026Updated last week
- Tools for identifying introgressed archaic sequence.☆12Jun 20, 2017Updated 9 years ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆17May 19, 2023Updated 3 years ago
- Infer the age of ancestral nodes in a tree sequence.☆27Jun 30, 2026Updated last month
- Two locus likelihoods and ARGs under changing population size☆14Dec 18, 2025Updated 7 months ago
- Drawing functions for Demes demographic models☆25Jul 20, 2026Updated 3 weeks ago
- Composite of Multiple Signals: tests for selection in meiotically recombinant populations☆14Jul 4, 2020Updated 6 years ago
- Scalable genetics toolkit☆279Mar 2, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Forward-time simulation in Python using fwdpp☆33Aug 1, 2026Updated last week
- SimRA (Simulation based on Random-graphs Algorithms) is a framework for simulating generic and complex evolutionary scenarios of multiple…☆13Nov 28, 2022Updated 3 years ago
- bcftools-compatible querying and format conversion for VCF Zarr☆26Jun 8, 2026Updated 2 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Jun 28, 2026Updated last month
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 3 years ago
- A Python package for landscape genomic simulation☆13Dec 15, 2025Updated 7 months ago
- Fast, whole-genome simulation of the discrete time Wright-Fisher process☆15Apr 6, 2020Updated 6 years ago
- feature-based deep learning for the identification of selective sweeps☆59Mar 31, 2026Updated 4 months ago
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆49May 26, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps aro…☆14Jul 29, 2026Updated last week
- VCF Zarr Specification☆18Jun 4, 2026Updated 2 months ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- A coalsecent simulator with selection☆22Dec 2, 2020Updated 5 years ago
- Unfazed by genomic variant phasing☆28May 26, 2024Updated 2 years ago
- Software for estimating genome-wide genealogies for thousands of samples☆44May 19, 2026Updated 2 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆14May 1, 2019Updated 7 years ago