tskit-dev / pyslimLinks
Tools for dealing with tree sequences coming to and from SLiM.
☆28Updated last month
Alternatives and similar repositories for pyslim
Users that are interested in pyslim are comparing it to the libraries listed below
Sorting:
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆58Updated 10 years ago
- Infer a tree sequence from genetic variation data.☆59Updated 2 months ago
- machine learning applications for dadi☆16Updated last year
- Sampling and inference of genealogies with recombination☆50Updated 7 months ago
- Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments☆48Updated 3 months ago
- ☆66Updated 3 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆58Updated 7 months ago
- predicting DFE and alpha from polymorphism data☆28Updated 7 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Updated 2 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- A set of tutorials for msprime and tskit.☆20Updated last month
- orthology assignment using phylogenetic and network analyses☆53Updated 2 weeks ago
- Software for detecting introgression using supervised machine learning☆21Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆50Updated 2 weeks ago
- ☆13Updated 4 years ago
- Drawing functions for Demes demographic models☆23Updated this week
- Haplotype and population structure inference using neural networks.☆28Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Updated 3 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 6 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- Infer demographic history with the Moran model☆51Updated 7 months ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Updated 2 months ago
- ☆27Updated 11 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- A reimplementation of a classical PSMC method in python for educational purposes☆17Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Updated last year
- ☆21Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 9 months ago