popsim-consortium / demes-pythonLinks
Tools for describing and manipulating demographic models.
☆19Updated 3 months ago
Alternatives and similar repositories for demes-python
Users that are interested in demes-python are comparing it to the libraries listed below
Sorting:
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆57Updated 10 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆42Updated last month
- Infer a tree sequence from genetic variation data.☆60Updated this week
- [mu]tation [s]pectrum [h]istory [i]nference☆26Updated 7 months ago
- A reimplementation of a classical PSMC method in python for educational purposes☆15Updated last year
- initial commit☆26Updated 2 years ago
- ☆13Updated 8 months ago
- ☆18Updated last month
- Demographic inference from whole genomes☆13Updated 2 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- Lossless VCF compression☆20Updated 3 years ago
- genotype dimensionality reduction with a VAE☆46Updated 5 months ago
- Sampling and inference of genealogies with recombination☆32Updated 2 months ago
- SNP genotyping in polyploids☆17Updated 5 years ago
- machine learning applications for dadi☆15Updated 7 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆43Updated 4 months ago
- Population genetic simulations in R 🌍☆60Updated 2 weeks ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- Infer the age of ancestral nodes in a tree sequence.☆22Updated this week
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- ☆30Updated this week
- ☆19Updated last year
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- ☆43Updated 5 months ago
- A utility for splitting mixed origin NGS reads☆10Updated 4 years ago
- Module for analysing admixture graphs☆28Updated 7 years ago
- A smorgasbord of R functions for performing and teaching population genomic analyses☆19Updated last week
- Minimal Assumption Genomic Inference of Coalescence☆14Updated 2 years ago