Mutational Signature Comprehensive Analysis Toolkit
☆16Nov 6, 2026Updated this week
Alternatives and similar repositories for musicatk
Users that are interested in musicatk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆14Nov 12, 2019Updated 6 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Batch Effects Quality Control Software☆11Sep 14, 2026Updated last month
- Implementation of FACETS for Terra☆12Jan 20, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆13Sep 24, 2025Updated last year
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Aug 22, 2022Updated 4 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Sep 6, 2026Updated 2 months ago
- ☆11Sep 7, 2023Updated 3 years ago
- A framework to infer mutational signatures in cancer over time☆57Jul 9, 2019Updated 7 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆15Jan 15, 2017Updated 9 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- variation discovery using long range information in linked-reads☆15Oct 5, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 6 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 6 months ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆26Dec 20, 2022Updated 3 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 6 years ago
- Battenberg R package for subclonal copynumber estimation☆100May 11, 2026Updated 5 months ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 8 years ago
- Tools for scraping of twitter data, conversion, text analysis and graph construction☆11Aug 1, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Somatic point mutation caller☆17Jul 8, 2016Updated 10 years ago
- Illumina read substitution and indel error corrector. Processes human WGS 45x depth reads in about 4 hours, resulting in the reads qualit…☆10Sep 17, 2026Updated last month
- A Julia package for extracting mutation signatures using topic models☆20Feb 23, 2022Updated 4 years ago
- ☆44Oct 27, 2018Updated 8 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 6 years ago
- Evaluating potential drug targets through human loss-of-function genetic variation☆12May 27, 2020Updated 6 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆21Jan 17, 2020Updated 6 years ago
- Battenberg algorithm and associated implementation script☆55Oct 21, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R/Shiny package for network-integrated pathway enrichment analysis☆14Dec 2, 2020Updated 5 years ago
- seqpac - A Framework for small RNA analysis in R using Sequence-Based Counts☆10Oct 12, 2026Updated 3 weeks ago
- ☆13Oct 15, 2026Updated 3 weeks ago
- Main ricopili repo for public releases☆54Apr 8, 2025Updated last year
- Principal component analysis using a linear autoencoder☆16May 25, 2019Updated 7 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆27Jul 30, 2022Updated 4 years ago