campbio / musicatk
Mutational Signature Comprehensive Analysis Toolkit
☆13Updated this week
Alternatives and similar repositories for musicatk:
Users that are interested in musicatk are comparing it to the libraries listed below
- Personalized prioritization of driver genes in cancer☆9Updated 2 years ago
- ☆10Updated 8 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆17Updated last week
- Testing a neutral evolution model on cancer sequencing data☆10Updated 3 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆14Updated 11 months ago
- ☆10Updated last year
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated 2 months ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- Decomposition of heterogeneous DNA methylomes☆23Updated 6 months ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Updated 3 years ago
- Code for EpiMap data browser☆14Updated 7 months ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆12Updated last year
- Python function for TMB snake plots☆16Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆21Updated 4 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- pipelines to process scRNA-seq data☆11Updated 4 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 3 years ago
- CircRNA testing and ploting R package☆9Updated 4 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆16Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Implementation of FACETS for Terra☆12Updated last year
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Updated last year
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year