SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui.
☆218Apr 22, 2026Updated 3 weeks ago
Alternatives and similar repositories for SLiM
Users that are interested in SLiM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆44Oct 30, 2025Updated 6 months ago
- Simulate ARGs and genomic sequence data using population genetic models☆214Apr 15, 2026Updated last month
- Population-scale Ancestral Recombination Graph (ARG) library☆184Updated this week
- A library of standard population genetic models☆140May 6, 2026Updated 2 weeks ago
- Run and Analyse SLiM Population Genetics Forward Simulations from R.☆10Nov 26, 2025Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Population genetic simulations in R☆63Apr 24, 2026Updated 3 weeks ago
- Tools for dealing with tree sequences coming to and from SLiM.☆28Mar 9, 2026Updated 2 months ago
- ☆14Dec 3, 2024Updated last year
- Sampling and inference of genealogies with recombination☆56Apr 10, 2026Updated last month
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- Software for estimating genome-wide genealogies for thousands of samples☆43Oct 17, 2025Updated 7 months ago
- deep learning prediction of geographic location from individual genome sequences☆52Jan 20, 2025Updated last year
- Infer a tree sequence from genetic variation data.☆63Apr 1, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tools for identifying introgressed archaic sequence.☆12Jun 20, 2017Updated 8 years ago
- GONE: Scripts, programs and an example data set☆56May 12, 2026Updated last week
- Forward-time simulation in Python using fwdpp☆32Updated this week
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 4 months ago
- Module for analysing admixture graphs☆28Apr 30, 2018Updated 8 years ago
- ☆21Jan 11, 2024Updated 2 years ago
- Faster multispecies coalescent inference using multilocus data☆15Aug 13, 2023Updated 2 years ago
- Tools test whether admixture occurred and more☆228May 5, 2026Updated 2 weeks ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆89Jun 14, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- Population genetics notes☆699Jun 1, 2023Updated 2 years ago
- predicting DFE and alpha from polymorphism data☆28Oct 4, 2018Updated 7 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated 2 years ago
- ☆21Oct 2, 2024Updated last year
- Assessing confidence in introgression among four populations☆28Apr 19, 2021Updated 5 years ago
- Repository for pipeline code☆26Feb 28, 2024Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆29Dec 5, 2024Updated last year
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆49May 6, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆187Dec 19, 2024Updated last year
- A Python package for landscape genomic simulation☆12Dec 15, 2025Updated 5 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆162Updated this week
- Infer the age of ancestral nodes in a tree sequence.☆26Apr 4, 2026Updated last month
- A hidden Markov model for detecting segments of shared ancestry (identity by descent)☆12Dec 15, 2023Updated 2 years ago
- feature-based deep learning for the identification of selective sweeps☆59Mar 31, 2026Updated last month
- Topology weighting from unphased genotypes of any ploidy☆25Apr 18, 2026Updated last month