MesserLab / SLiMLinks
SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui.
☆177Updated last week
Alternatives and similar repositories for SLiM
Users that are interested in SLiM are comparing it to the libraries listed below
Sorting:
- Simulate genealogical trees and genomic sequence data using population genetic models☆192Updated 2 weeks ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆132Updated last month
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆312Updated last year
- Program for analysing NGS data.☆236Updated 3 months ago
- Recovering genes from targeted sequence capture data☆123Updated 4 months ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆166Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆306Updated 2 months ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆151Updated 9 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆173Updated 5 months ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆162Updated 2 weeks ago
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆97Updated 2 weeks ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆242Updated 2 weeks ago
- Finds SNP sites from a multi-FASTA alignment file☆260Updated 4 years ago
- SMC++ infers population history from whole-genome sequence data.☆168Updated last year
- A library for running k-mers based GWAS☆109Updated 7 months ago
- ☆209Updated 4 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆115Updated last year
- A library of standard population genetic models☆133Updated this week
- Efficient phylogenomic software by maximum likelihood☆202Updated 3 years ago
- oxford dot plots☆153Updated 3 weeks ago
- Population-scale Ancestral Recombination Graph (ARG) library☆162Updated last week
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆86Updated 3 years ago
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆155Updated 3 weeks ago
- Genome Assembly and Annotation Service code☆212Updated last year
- A variational framework for inferring population structure from SNP genotype data.☆136Updated 2 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆269Updated 2 weeks ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆124Updated 7 months ago
- Haplotype based scans for selection☆130Updated last month
- RAxML Next Generation: faster, easier-to-use and more flexible☆428Updated this week
- Estimating Effective Migration Surfaces☆103Updated last year