Two locus likelihoods and ARGs under changing population size
☆14Dec 18, 2025Updated 3 months ago
Alternatives and similar repositories for ldpop
Users that are interested in ldpop are comparing it to the libraries listed below
Sorting:
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 7 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Nov 13, 2019Updated 6 years ago
- ☆11Mar 4, 2025Updated last year
- Fast inference of fine-scale recombination rates based on fused-LASSO☆56Feb 10, 2026Updated last month
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated last month
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- Estimate recombination rates from population genetic data☆71Jun 10, 2020Updated 5 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Nov 9, 2019Updated 6 years ago
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated 9 months ago
- feature-based deep learning for the identification of selective sweeps☆59Feb 7, 2026Updated last month
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- Tools for dealing with tree sequences coming to and from SLiM.☆28Mar 9, 2026Updated last week
- ☆11Mar 13, 2012Updated 14 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆88Jun 14, 2021Updated 4 years ago
- The MafFilter genome alignment processor☆19Jan 6, 2026Updated 2 months ago
- ☆20Feb 24, 2023Updated 3 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated last year
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Feb 21, 2025Updated last year
- Modified TIR-Learner for Rice genome☆12Jun 14, 2019Updated 6 years ago
- Simulation of Epistasis Local adaptation, with Ancestry and Mate choice☆11Apr 22, 2023Updated 2 years ago
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- Introduction to statistics using R and Rstudio☆10Mar 18, 2021Updated 5 years ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 2 years ago
- ☆15Jun 12, 2020Updated 5 years ago
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- Tissue of ACTion scores for Investigating Complex trait-Associated Loci☆13Mar 27, 2021Updated 4 years ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- a broadly applicable tool for automated gene identification and retrieval☆41Feb 22, 2026Updated last month
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- faster haplotype-based admixture inference and dating software☆10Nov 25, 2025Updated 3 months ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆16May 19, 2023Updated 2 years ago
- Tutorial on using popular tools for learning about population history☆53Jul 18, 2018Updated 7 years ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12May 22, 2025Updated 10 months ago
- The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps☆14Feb 2, 2021Updated 5 years ago
- ☆68Dec 5, 2022Updated 3 years ago