Population-scale Ancestral Recombination Graph (ARG) library
☆181Apr 20, 2026Updated last week
Alternatives and similar repositories for tskit
Users that are interested in tskit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Infer a tree sequence from genetic variation data.☆63Apr 1, 2026Updated 3 weeks ago
- Simulate ARGs and genomic sequence data using population genetic models☆212Apr 15, 2026Updated 2 weeks ago
- A library of standard population genetic models☆140Apr 14, 2026Updated 2 weeks ago
- A set of tutorials for msprime and tskit.☆21Updated this week
- Scalable genetics toolkit☆275Mar 2, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆217Apr 22, 2026Updated last week
- ☆15Apr 16, 2026Updated last week
- Tools for dealing with tree sequences coming to and from SLiM.☆28Mar 9, 2026Updated last month
- Software for estimating genome-wide genealogies for thousands of samples☆43Oct 17, 2025Updated 6 months ago
- Rust bindings for the tskit library☆18Apr 22, 2026Updated last week
- Tools for describing and manipulating demographic models.☆19Mar 30, 2026Updated 3 weeks ago
- Infer the age of ancestral nodes in a tree sequence.☆26Apr 4, 2026Updated 3 weeks ago
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Sep 14, 2025Updated 7 months ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆61Feb 10, 2026Updated 2 months ago
- predicting DFE and alpha from polymorphism data☆28Oct 4, 2018Updated 7 years ago
- VCF Zarr Specification☆15Mar 18, 2026Updated last month
- Forward-time simulation in Python using fwdpp☆32Apr 1, 2026Updated 3 weeks ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Mar 21, 2026Updated last month
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆19Apr 9, 2025Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Mar 27, 2026Updated last month
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 2 years ago
- A Python package for exploring and analysing genetic variation data☆315Apr 1, 2026Updated 3 weeks ago
- Haplotype and population structure inference using neural networks.☆29Dec 5, 2024Updated last year
- cython + htslib == fast VCF and BCF processing☆440Feb 23, 2026Updated 2 months ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆41Apr 8, 2024Updated 2 years ago
- ☆19May 10, 2023Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆49Updated this week
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆58Aug 9, 2015Updated 10 years ago
- Sampling and inference of genealogies with recombination☆56Apr 10, 2026Updated 2 weeks ago
- Population genetics notes☆698Jun 1, 2023Updated 2 years ago
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 5 years ago
- Population genetic simulations in R☆63Updated this week
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆61Jun 27, 2025Updated 10 months ago