Alternatives and similar repositories for FILET:

Users that are interested in FILET are comparing it to the libraries listed below

• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• VIB-PSB / ksrates
  ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…
  ☆19Updated last week
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 7 months ago
• NBISweden / GenErode
  GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples …
  ☆25Updated this week
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆16Updated last year
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆18Updated 5 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆30Updated 9 months ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆12Updated last year
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated last month
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆49Updated 2 months ago
• Sendrowski / fastDFE
  Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…
  ☆16Updated 3 weeks ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆33Updated 2 months ago
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆13Updated last month
• popgenmethods / SINGER
  Sampling and inference of genealogies with recombination
  ☆30Updated 6 months ago
• russcd / Ancestry_HMM
  ☆28Updated 2 years ago
• LohseLab / gIMble
  A genome-wide IM blockwise likelihood estimation toolkit
  ☆16Updated 9 months ago
• hsigeman / findZX
  ☆19Updated 2 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• gphocs-dev / G-PhoCS
  G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …
  ☆34Updated 3 years ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆16Updated last year
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆15Updated 5 years ago
• tangerzhang / calc_switchErr
  ☆27Updated last week
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆33Updated 2 months ago
• mrvollger / NucFreq
  ☆35Updated last year
• mrmckain / PUG
  Testing WGD placement along a species tree using gene trees.
  ☆9Updated 6 years ago
• CarineRey / pcoc
  Convergent substitution detection tool based on the PCOC model
  ☆30Updated 3 years ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• btmartin721 / ClineHelpR
  Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…
  ☆16Updated 6 months ago
• therkildsen-lab / lcwgs-simulation
  ☆16Updated 2 years ago