sanjaynagi / rna-seq-pop
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
☆18Updated 3 months ago
Alternatives and similar repositories for rna-seq-pop:
Users that are interested in rna-seq-pop are comparing it to the libraries listed below
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- ☆17Updated 2 years ago
- ☆21Updated 2 months ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- Invertory of TE-gene isoforms☆9Updated last year
- Transposable Elements MOvement detection using LOng reads☆21Updated 3 months ago
- Enabling differential allele-specific analysis☆11Updated 2 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 3 months ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Upscaling SV detection to a multi-population level.☆22Updated 4 years ago
- ☆16Updated 4 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- A repo contains historical and updated MTEC libraries.☆17Updated 5 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 2 years ago
- Evolutionary Transcriptomics with R☆42Updated this week
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆22Updated 5 months ago
- ☆23Updated 3 years ago
- ☆28Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- Repository for pipeline code☆24Updated last year
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated 3 weeks ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Updated last year