Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
☆18Feb 17, 2026Updated 5 months ago
Alternatives and similar repositories for rna-seq-pop
Users that are interested in rna-seq-pop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆22Oct 2, 2019Updated 6 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Jun 28, 2026Updated last month
- Gene Family Annotation Workflow☆12Mar 26, 2024Updated 2 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- ☆17Mar 2, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Statistics and analysis for variation graphs☆52Dec 17, 2024Updated last year
- Tools for dealing with tree sequences coming to and from SLiM.☆28Jun 30, 2026Updated 3 weeks ago
- 3’ Tag RNA-seq pipeline (Work in progress)☆10Mar 14, 2021Updated 5 years ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12May 22, 2025Updated last year
- Readme☆10Mar 15, 2020Updated 6 years ago
- FunctionaL Omics Processing platform☆13Jul 25, 2024Updated 2 years ago
- ☆57Jun 12, 2025Updated last year
- Repository for pipeline code☆26Feb 28, 2024Updated 2 years ago
- do some exercise☆15Dec 2, 2025Updated 7 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆21Jul 26, 2023Updated 3 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy …☆23Feb 29, 2024Updated 2 years ago
- Working on cotton resequencing☆11Jun 2, 2020Updated 6 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- This is the Haplotypo repository☆22May 24, 2024Updated 2 years ago
- ☆17May 15, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- ☆32Dec 16, 2022Updated 3 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆69Mar 27, 2026Updated 4 months ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Apr 28, 2023Updated 3 years ago
- Mosaic Genome Assembler☆26Jul 17, 2026Updated last week
- R package for generating beautiful and customizable plots for the exons and introns of any gene☆12Jul 26, 2021Updated 5 years ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago
- adaptive genome assembly using nanopore sequencing☆27Updated this week
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- Workflow for identifying and classifying homologous gene/protein sequences☆21Oct 6, 2025Updated 9 months ago
- ☆10Oct 18, 2021Updated 4 years ago
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Jan 16, 2023Updated 3 years ago