molpopgen / fwdpy11Links
Forward-time simulation in Python using fwdpp
☆31Updated last week
Alternatives and similar repositories for fwdpy11
Users that are interested in fwdpy11 are comparing it to the libraries listed below
Sorting:
- [mu]tation [s]pectrum [h]istory [i]nference☆27Updated last year
- ☆20Updated 5 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆58Updated 10 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- ☆12Updated 4 months ago
- Infer a tree sequence from genetic variation data.☆59Updated this week
- Tools for dealing with tree sequences coming to and from SLiM.☆28Updated last month
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Updated 5 years ago
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆49Updated this week
- machine learning applications for dadi☆17Updated last year
- Sampling and inference of genealogies with recombination☆51Updated 7 months ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆55Updated last month
- Work for the tree sequence inference paper.☆23Updated 5 years ago
- ☆21Updated last year
- Sweep Inference Framework (controlling for correlation)☆28Updated last year
- R package for pedigree inference based on SNP data☆28Updated last month
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- genotype dimensionality reduction with a VAE☆48Updated 11 months ago
- A reimplementation of a classical PSMC method in python for educational purposes☆17Updated last year
- A set of tools for modelling ancestry patterns along the genome.☆23Updated 3 weeks ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated 2 years ago
- Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)☆47Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 5 months ago
- ☆66Updated 3 years ago
- intro to programming for IE2 evolution students☆12Updated 2 years ago
- Transfer coordinates across genomes☆23Updated 8 months ago
- Demographic inference from whole genomes☆13Updated 3 years ago
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆36Updated 2 years ago
- Software for estimating genome-wide genealogies for thousands of samples☆39Updated 3 months ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 6 years ago