Alternatives and similar repositories for fwdpy11

Users that are interested in fwdpy11 are comparing it to the libraries listed below

• popgenmethods / SINGER
  Sampling and inference of genealogies with recombination
  ☆30Updated last week
• LohmuellerLab / fitdadi
  Tools for inference of the DFE with dadi
  ☆14Updated 4 years ago
• MyersGroup / relate
  Software for estimating genome-wide genealogies for thousands of samples
  ☆36Updated last month
• lntran26 / donni
  machine learning applications for dadi
  ☆15Updated 5 months ago
• fgvieira / ngsLD
  Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
  ☆47Updated last year
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated last month
• avaughn271 / AdmixtureBayes
  ☆20Updated 8 months ago
• popsim-consortium / manuscript
  PopSim consortium manuscript
  ☆7Updated 5 years ago
• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 4 years ago
• gvbarroso / iSMC
  The integrated Sequentially Markovian Coalescent
  ☆14Updated 3 weeks ago
• tskit-dev / pyslim
  Tools for dealing with tree sequences coming to and from SLiM.
  ☆28Updated last month
• mdrasmus / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆56Updated 9 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• CshlSiepelLab / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆13Updated 2 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆51Updated last month
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated 11 months ago
• standard-aaron / palm
  Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies
  ☆16Updated 4 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 4 years ago
• grahamgower / demesdraw
  Drawing functions for Demes demographic models
  ☆21Updated 10 months ago
• stschiff / msmc2
  ☆58Updated 2 years ago
• gravelLab / tracts
  A set of tools for modelling ancestry patterns along the genome.
  ☆22Updated 4 months ago
• harrispopgen / mushi
  [mu]tation [s]pectrum [h]istory [i]nference
  ☆25Updated 5 months ago
• JiscaH / sequoia
  R package for pedigree inference based on SNP data
  ☆26Updated last year
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆35Updated last year
• tskit-dev / tsinfer
  Infer a tree sequence from genetic variation data.
  ☆59Updated 2 months ago
• tskit-dev / tsdate
  Infer the age of ancestral nodes in a tree sequence.
  ☆21Updated 2 weeks ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• popgenmethods / ldpop
  Two locus likelihoods and ARGs under changing population size
  ☆14Updated 2 months ago
• CMPG / signet
  An R package to detect selection in biological pathways
  ☆14Updated last year
• mcveanlab / treeseq-inference
  Work for the tree sequence inference paper.
  ☆23Updated 4 years ago